Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1013 ATGTCGGCCGCACCTCACAATTCTCCCGATGATTCAACCCCCGATAATGCAACACCCGATAACTCTACCCCCGATGACTCTGACAACTCATCTTCACCACCGTCATCATCACCACCAGCGTCACCACCACCACCACCATCACCACCGCCATCATCATCATCATCATCACCGCCACCACCACTGTCATCACCACCGTCATCACCACCGCCACCATCCTCAGGAAACTCCTCTCCGCCCCCACCAACATCAAACAATTCAAGCCCACCACCTCCCAGTTCATCCTCGCACTCTCCTTCTCCTCCTTCATCGACACATTCTCCACCCTCCTCTCAATCACCTCCATCTCCTCACAAATCATTAGAATCCTCACCATCCTCTCATAAGTCTAGTGGCGGAGACGATAGCAATAAGGCCATAATTGGAGCGGTGCTTGGGGTAGGGAGTGTTCTTCTTATTGTAGTTATTGTTTGTGTTGTTTGCTCCAGGAAGAAGAAAAAAAAGAATATGTACTATTATGGAGACCCTCCTCATGGAAAAGGGAATAACTATTACAATAACAGTGGGCAACACCCAAATTATTATGGAGGTCCACACGGGGACCATGTTGTGAGAGTACAAAATGGAATGGGTCCTAATGGTGGCGGGTGGGGTGCACCACCACCACCTCCTCCATTAATGAATAGTGCTGATATGAGCTCCAATTACTCAACGGGGCCACCTCCTCTGCCTCCTCCCTCACCAAGTCTTGCTTTAGGCCTTAAAGGGGGTACTTTCACTTACGAAGAATTGGCAGCTGCCACCAGTGGATTTGCCGATATAAATTTGATAGGACAAGGTGGCTTTGGTTATGTCCATAAGGGTGTGTTGCCTAATGGAAAGGAAGTGGCCGTTAAGAGTCTAAAATCAGGTAGCGGGCAAGGAGAGCGAGAGTTCCAAGCGGAGATTGACATCATTAGTCGCGTTCATCATCGCCATCTCGTGTCACTTGTTGGATACTCTATTGCTGGCGGGCAAAGAATGTTGGTCTATGAATTTATTCCCAATAATACTCTAGAATATCACCTTCATGGAAAGGGTACACCAACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCAGCTAAAGGGCTTGCCTATCTTCATGAGGACTGTCATCCTCGCATAATTCATCGTGATATTAAAGCTGCAAATGTCCTTATTGATGATAGCTTTGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTAACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGGTACCTAGCTCCTGAATATGCATCAAGCGGAAAATTGACAGAAAAATCTGATGTTTTTTCATTTGGAGTCATGTTATTGGAACTTATAACTGGAAAGCGACCTGTAGATCACACAAATACAATGGATGACAGCTTAGTAGACTGGGCTCGACCACTACTAACTCGTGGACTAGAGGAGGATGGCAACTTTGGAGAGTTGGTGGATTTATTTTTAGAGGGAAACTACAGTCCTCAAGAACTGCAAAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGTCATTCTGCCAAGAAGCGTCCAAAAATGAGCCAGATTGTGAGAATATTGGAAGGAGATGTCTCACTAGACGACTTGAGGGGTGGGGTTAAACCAGGACACACTGCTTTCACCCCTTCATCTTTGAATTCAGATCAATATGATACAATGCAATACAATGCTGATTTAGAAAAGTTCAGAAAAGCAGTGTTTTCTAGCCAGGAATATGGCACCACCAGCAGTACCTCTAGCGGTGATATGAGCGGCCAGAGGCATCAGCACTTTTAG 1845 0.4602 MSAAPHNSPDDSTPDNATPDNSTPDDSDNSSSPPSSSPPASPPPPPSPPPSSSSSSPPPPLSSPPSSPPPPSSGNSSPPPPTSNNSSPPPPSSSSHSPSPPSSTHSPPSSQSPPSPHKSLESSPSSHKSSGGDDSNKAIIGAVLGVGSVLLIVVIVCVVCSRKKKKKNMYYYGDPPHGKGNNYYNNSGQHPNYYGGPHGDHVVRVQNGMGPNGGGWGAPPPPPPLMNSADMSSNYSTGPPPLPPPSPSLALGLKGGTFTYEELAAATSGFADINLIGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYSIAGGQRMLVYEFIPNNTLEYHLHGKGTPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNTMDDSLVDWARPLLTRGLEEDGNFGELVDLFLEGNYSPQELQRMAACAAASIRHSAKKRPKMSQIVRILEGDVSLDDLRGGVKPGHTAFTPSSLNSDQYDTMQYNADLEKFRKAVFSSQEYGTTSSTSSGDMSGQRHQHF* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1013 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Apr7g1013 614 ProSiteProfiles Protein kinase domain profile. 270 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1013 614 MobiDBLite consensus disorder prediction 115 133 - -
Apr7g1013 614 PANTHER RECEPTOR-LIKE KINASE 47 608 - -
Apr7g1013 614 MobiDBLite consensus disorder prediction 175 244 - -
Apr7g1013 614 MobiDBLite consensus disorder prediction 595 614 - -
Apr7g1013 614 Pfam Protein tyrosine and serine/threonine kinase 275 476 IPR001245 GO:0004672|GO:0006468
Apr7g1013 614 MobiDBLite consensus disorder prediction 1 134 - -
Apr7g1013 614 Gene3D Phosphorylase Kinase; domain 1 250 345 - -
Apr7g1013 614 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Apr7g1013 614 Gene3D Transferase(Phosphotransferase) domain 1 346 551 - -
Apr7g1013 614 SMART serkin_6 270 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1013 614 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 47 608 - -
Apr7g1013 614 SUPERFAMILY Protein kinase-like (PK-like) 247 543 IPR011009 -
Apr7g1013 614 MobiDBLite consensus disorder prediction 35 114 - -
Apr7g1013 614 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1013 Apr-Chr7 17150995 17156107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1013 89 609 Trihelix Transcription Factor Family AT1G70460 49.064 8.74e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Apr7g1013 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1013 - - gmx:100777163 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0269 3 5264012 5267825 Apr7g1013 7 17150995 17156107 ECH
Apr7g1013 7 17150995 17156107 Apr7g1013 7 17150995 17156107 ECH
Apr7g1013 7 17150995 17156107 Apr3g0269 3 5264012 5267825 PCT