Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1004 ATGCCTGTTGATTTGGATAATGCTTCAACAGCTTCAGGGGAAGCTAGCGTTTCTTCCTCTGGCAATCAGACAGTGCCTCCAAAATCAACCACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCTAAGACCCTAATGGCCACGAACCGATTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTACCATGGAAGCTGAGGCAGAGGTCAAGCAAAGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCAACATGTGTTCATCACGATCCTTCTAGAGCTTTGGGCGATCTCACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTATAAATGCGATTGTGGGACTTTGTTTTCGAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCTTTAGCTGAGGAGAGTGCAAGATCTCAGACTCAGACTGCTCCAAAGGCTAGTTCAGAGTCAGATTCGAAAGTTGTTACTGGTGATTCATCACCTCCAGTGGCGGCGGCGGCGGCGGCTCCACCGCCACCGCCGGCCCCTGCAGTTTCTTCTCAGTCAAACAGTGTTGTACCCATGACGGCTGCTTTGCAGACACAAAATCCAGAGTTGCCAGAAAATTCCCCACAAATCATTGAGGAACCACAGGCAAATACTGTTATGAATGGGAGCTGTAGCAGCAGTAGCACCAGCTCAACAAGCAACAGCAATGGTGGTACTAGCAGCAGCGTATTTGCAAGCCTGTTTGCTTCATCAACAGCATCTGGAACCGGAAGCCTCCAATCTCAAGCACCAGCATTCCCTGACCTAATTAGGGCCATGGGGCGACCAGATCATCCAGCAGACCTCCCAGGGCCTTCATCTACTGAGCCCATTTCCCTGTGCCTTGCCACCAATCACGGGTCATCCATTTTTGGAACGGGAGGGCAAGAGCGCCGTCAGTATGCCCCACCACCACAACCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATGCTTCTTTGCTTCGGGGGTTAGGCATAGTATCATCTTCTGCACCAACCTCATCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGCAGCCAGTGGAACCAGAAAGTGCCTCGGTTCCTGCAGGGCTTGGACTCGGGCTTCCCTGTGATGGCAGCTCTGGACTAAAGGAGTTGATGATGGGGACTCCTGCCATGTTTGGTCCAAAGCAGACAACCCTTGATTTTCTTGGATTGGGGATGGCTGCTGGGGGCCCTCCTGGGGGAGGCTTATCGGCACTCATCACCTCTATTGGTGGCAGTCTGGATGTTACTGCTGCAGCGGCTCCCTTTCGTAGTGGAGAATTCCCAGGCAAAGATATTGGGAGGAGCACTTGA 1551 0.5132 MPVDLDNASTASGEASVSSSGNQTVPPKSTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQTAPKASSESDSKVVTGDSSPPVAAAAAAPPPPPAPAVSSQSNSVVPMTAALQTQNPELPENSPQIIEEPQANTVMNGSCSSSSTSSTSNSNGGTSSSVFASLFASSTASGTGSLQSQAPAFPDLIRAMGRPDHPADLPGPSSTEPISLCLATNHGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSAPTSSGQQDSLQWGQQPVEPESASVPAGLGLGLPCDGSSGLKELMMGTPAMFGPKQTTLDFLGLGMAAGGPPGGGLSALITSIGGSLDVTAAAAPFRSGEFPGKDIGRST* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1004 516 MobiDBLite consensus disorder prediction 192 242 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 272 292 - -
Apr7g1004 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 515 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 405 425 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 1 43 - -
Apr7g1004 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Apr7g1004 516 Gene3D Classic Zinc Finger 41 107 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 9 31 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 192 214 - -
Apr7g1004 516 Gene3D Classic Zinc Finger 115 196 - -
Apr7g1004 516 MobiDBLite consensus disorder prediction 405 429 - -
Apr7g1004 516 SMART c2h2final6 137 157 IPR013087 -
Apr7g1004 516 SMART c2h2final6 102 132 IPR013087 -
Apr7g1004 516 SMART c2h2final6 61 83 IPR013087 -
Apr7g1004 516 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Apr7g1004 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 515 - -
Apr7g1004 516 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1004 Apr-Chr7 17076363 17080095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1004 1 516 IDZ Gene Family AT5G66730 60.781 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g1004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1004 K25869 - gmx:100806404 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1004 7 17076363 17080095 Apr7g1004 7 17076363 17080095 ECH
Apr3g0264 3 5131388 5134994 Apr7g1004 7 17076363 17080095 ECH
Apr7g1004 7 17076363 17080095 Apr3g0264 3 5131388 5134994 PCT