Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0996 ATGAATCATCGACCTATCCAAGACCATATGATGCTTATCTCTCAGTTATACCCTGCCGGTGCATACACTCAAATTATTACTCAACAAGGGGAGAAGAAGCCAAGACGCCGGCGTAATAAGAAGAGCAAAGGAGGAGAAAACGGAGCCTCGGAAGCCAACAAAAAAAGGAAGCTTAGTCTAGAACAAGTTAATCTACTTGAGCTAAACTTTGGAAATGAGCATAAACTTGAGTCCGAAAGGAAGGACAGGCTCGCAATGGAGCTAGGTTTGGACCCTCGACAAGTTGCCGTGTGGTTTCAAAATAGAAGAGCTCGATGGAAGAACAAGAAGTTGGAAGAAGAGTACTCGAACCTTAAAAAAAACCATGAAACCACCTTGCTCGAGAAATGTCGCCTTGAAAGTGAGGTGTTAAAGCTGAAGGATCAACTGTCGGAGGCTGAGAAGGAGATTCAGCGGCTTCTAGAGCGTGCTGATAGAGTCCCAAGCAACAGTTCCAGTACTTCATCACAGTCACAGTCACAGTCACAGTCAATGGAAGCTGTGGACCCACCATTTCTTGGAGAATTTGGAGTTGATGGATATGACGATGATGTGTTCTACGTGCCTGAGACCCATTACATCAATGGCATGGAATGGATTAATGTGTTCATGTAA 654 0.445 MNHRPIQDHMMLISQLYPAGAYTQIITQQGEKKPRRRRNKKSKGGENGASEANKKRKLSLEQVNLLELNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKNHETTLLEKCRLESEVLKLKDQLSEAEKEIQRLLERADRVPSNSSSTSSQSQSQSQSMEAVDPPFLGEFGVDGYDDDVFYVPETHYINGMEWINVFM* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0996 217 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Apr7g0996 217 Gene3D - 45 117 - -
Apr7g0996 217 MobiDBLite consensus disorder prediction 154 179 - -
Apr7g0996 217 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Apr7g0996 217 SMART HOX_1 52 113 IPR001356 GO:0003677
Apr7g0996 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 216 - -
Apr7g0996 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 216 IPR045224 GO:0003700
Apr7g0996 217 MobiDBLite consensus disorder prediction 27 56 - -
Apr7g0996 217 MobiDBLite consensus disorder prediction 158 179 - -
Apr7g0996 217 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Apr7g0996 217 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Apr7g0996 217 Coils Coil 101 163 - -
Apr7g0996 217 CDD homeodomain 54 110 IPR001356 GO:0003677
Apr7g0996 217 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Apr7g0996 217 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0996 Apr-Chr7 17007005 17008902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0996 1 217 Homeobox Transcription Factor Family AT2G18550 54.386 3.58e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr7g0996 Homeodomain 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0996 K09338 - gmx:100809616 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0996 7 17007005 17008902 Apr7g0996 7 17007005 17008902 ECH
Apr7g0996 7 17007005 17008902 Apr3g0259 3 5059981 5061758 PCT