Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0985 ATGGTGAGTGGTTTTGGGGAATCAACGACAGCATCTCCTCCGAGCCCATCTTGCTCGGGGAACAGTTCAAACGATGCTGGTGATTTTGAATGCAACATATGCTTTGATTTGGCACAAGACCCAGTGATCACTCTGTGTGGTCATTTGTTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCACTCCCATTCTAAAGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCCCTTTATGGAAGGGGCAAAAATCAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCATCGGGGCAGAGGCCACAAACGGCACCGCCCCCGCCACCTCCTGAGACCAACCCATTTGGGAATTATGGGTTTGGCCTCATGGGAGGTTTCATTCCCATGGCAACTGCCAGATTTGGAAACTTCACACTTTCCACTGCCTTTGGTGGTTTTATCCCGTCCCTGCTCAACATTCAGTTCCATGGCTTTCAGGATGCCACTGTTTATGGGACAACGTCTGGTTATCCCTTTGGGTTTAATGCCTTCCATGGAGGGAACTCGCGGGGTTTTTCACAGGCAACTGGTCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATTTGCTTTTGTTGATTGGATTTCTCGTCCTCCTCACTGTTATTTTTGTGTGGTAA 693 0.4949 MVSGFGESTTASPPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSKECPVCKALVQEEKLVPLYGRGKNQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPETNPFGNYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGFNAFHGGNSRGFSQATGQVQRQEDNVLKNLLLLIGFLVLLTVIFVW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0985 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr7g0985 230 MobiDBLite consensus disorder prediction 110 125 - -
Apr7g0985 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 95 IPR013083 -
Apr7g0985 230 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 228 - -
Apr7g0985 230 MobiDBLite consensus disorder prediction 1 21 - -
Apr7g0985 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Apr7g0985 230 SUPERFAMILY RING/U-box 27 84 - -
Apr7g0985 230 MobiDBLite consensus disorder prediction 84 125 - -
Apr7g0985 230 CDD RING-HC_AtRMA_like 29 73 - -
Apr7g0985 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Apr7g0985 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Apr7g0985 230 SMART ring_2 31 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0985 Apr-Chr7 16897062 16898466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0985 21 228 C3H Transcription Factor Family AT2G23780 63.850 5.50e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0985 K10666 - gmx:100814783 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0985 7 16897062 16898466 Apr7g0985 7 16897062 16898466 ECH