Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0981 ATGGCCTCTCACGGTACCAATTCCATCATTTGGCGCTTTGTTTTAGCTATTGTAATTGTTGCCCTTTTCACTCCAAACCTTAGTTCTGCCGAGCAATCCAAGATAGATGGCTTGAAAATGAATGTAATTGATCGATGTTGGAGACCGAATCCTGAGTGGAGAAGGAATCGGCCCCAACTAGCCACATGTTCTGTGGGCTATGCTGGCAAGATGACTAACAACATTGGCAAGAACCTCATCCACTATGAAGTTACTGATCCCAGTGATGACCCTATAAACCCTAGACCTGGCACCTTGAGATACGGAGCTTCCGTGATTCAAGATAAAGTATGGATAACATTCCAAAGAGACATGCACATTAGGCTCGAGAGACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTAAACATTGCTGATAATGCATGCCTAATGATCTTTAAGGCCACCAACGTAATCATCCATAGCATTCGGATTCATCATTGCAAACCTCAAGCCCCTGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCCTTTGGGCCAAGTAGATGGGGATGCAATCAGATTGGTCACGGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGCCAAGATGGTCTTCTTGATGTAACGCGGGGTTCCACTGACGTGACCATATCCAACAATTGGTTTAGAGCCCAAGACAAGGTTATGCTTCTTGGCCATGATGATGGGTATGTGAGAGACAGGAACATGAAGGCTACCGTTGTGTACAACCATTTTGGACCTAATTGCAACCAGCGCATGCCAAGGATTCGCCATGGATATGCGCATGTTGCCAACAATCTTTACTTAGGTTGGGTGCAATATGCTATCGGGGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCGACAACAGGGAGTAAGGAGGTGACGTGGAGAAAGGATGGTCATAAAAATGGAGACAGATGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCCTCCTTTGCGGTAACAAAGGGAGGACGTGTGCCAAAGCCGGATTATAGCGAAGAACAAAGCTTTAAAGTTGTTGATGCCAAATCCGTAAGATCATTGACACGCTCATCAGGTGCATTGCGATGCACTTAA 1161 0.4505 MASHGTNSIIWRFVLAIVIVALFTPNLSSAEQSKIDGLKMNVIDRCWRPNPEWRRNRPQLATCSVGYAGKMTNNIGKNLIHYEVTDPSDDPINPRPGTLRYGASVIQDKVWITFQRDMHIRLERPLLISSFTTIDGRGVNVNIADNACLMIFKATNVIIHSIRIHHCKPQAPGMVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRAQDKVMLLGHDDGYVRDRNMKATVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMEPSLKSEANLFIAPTTGSKEVTWRKDGHKNGDRWEFHSVRDAFENGASFAVTKGGRVPKPDYSEEQSFKVVDAKSVRSLTRSSGALRCT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0981 386 Gene3D - 40 384 IPR012334 -
Apr7g0981 386 PANTHER PECTATE LYASE 2 386 - -
Apr7g0981 386 SUPERFAMILY Pectin lyase-like 35 384 IPR011050 -
Apr7g0981 386 PANTHER PECTATE LYASE 18-RELATED 2 386 IPR045032 GO:0030570
Apr7g0981 386 Pfam Pectate lyase 128 308 IPR002022 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Apr7g0981 386 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Apr7g0981 386 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0981 Apr-Chr7 16863324 16864874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0981 71 318 Polysaccharide Lyase AT5G09280 70.968 1.41e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0981 K01728 - gmx:100780437 689.108