Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0970 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATCATAAAGTTTCACGAGGGCAATACCATGGCAAATATGGAGAGGATAGAATTTGGGATAATCATCGGAGTTCAATGGATGACTTGACGGATATTGAGAGAGAAGACATTGACTGTGCAATTGCACTCTCTCTGTCCGAGGAGGATCACAAAGGGAAAAAAGTTATTGAGGACAACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATGAGGAAGATGAACATCTTGCTGAAGTTCAACCAGAGGAAAATGAAAATCTTGGTAAAGTTCAAGTAGATGAAGATGAATATCTCGCAAAAATTCAACAAGATGAAGATGAACGTCTTGCTAAAGCTCAACTTGAGGAAGATGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGAACGTTGGTTCTCCTCCTCAATATGATAATGACTCTACATTTCTACCTCAGCTCTTTCCCCCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCAGAATGCTTCTGCTGTCATGCATGCCATCTGCCAATCACTGATCATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTACAGAGAGAAGCATCACCCAAGATGTGATGTCTGCAAGAACTATATCCCAACTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTTTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGTTATGTTTAGAGTGCCTAGACTCATCAATTATGGATACTCATGAATGTCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGGCAAGCTCTGAATGAGGCCATGGAGGGGGAAAAGCATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTTAAGGAGACCCAGGATAGGGGCAGGCTACCGAGTCACAGACATGATAACGGAACCTTATAGGCTGGTCCGGCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCCCATATGTGGTTAGATTCAGAGCTTTATTCTGGATCTGGGAATGATGGTGCATCATCGTCATCTTCATCTTCATCATCACCTTCGTCCTCTTCTACATCATCAAAGAAGGGTAAACGATCTGACTTTGAGAAAAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATGCCTCCTCAGCTTATGGAGATGGATTTAGACAGGGTAACCGAGCAATGCTTAAGTATGGACTTAAAAGGACCCTTGATCATATCCATATGACTGGAAGTTTTCCATATTGA 1605 0.4212 MGWFTKLLKGSDHKVSRGQYHGKYGEDRIWDNHRSSMDDLTDIEREDIDCAIALSLSEEDHKGKKVIEDNSQSEDEELCKIDEEDEHLAEVQPEENENLGKVQVDEDEYLAKIQQDEDERLAKAQLEEDEQLARAIQESLNVGSPPQYDNDSTFLPQLFPPGYRICAGCKTEIGQGRFLSCMGAVWHPECFCCHACHLPITDHEFSMSSNRPYHKSCYREKHHPRCDVCKNYIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKHGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRVTDMITEPYRLVRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNDGASSSSSSSSSPSSSSTSSKKGKRSDFEKKLGEFFKHQIESDASSAYGDGFRQGNRAMLKYGLKRTLDHIHMTGSFPY* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0970 534 SMART lim_4 165 217 IPR001781 -
Apr7g0970 534 PANTHER PROTEIN DA1-RELATED 2 1 534 IPR045218 -
Apr7g0970 534 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 534 - -
Apr7g0970 534 CDD LIM_DA1 166 218 - -
Apr7g0970 534 ProSitePatterns LIM zinc-binding domain signature. 166 200 IPR001781 -
Apr7g0970 534 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 127 146 IPR003903 -
Apr7g0970 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 247 - -
Apr7g0970 534 MobiDBLite consensus disorder prediction 455 480 - -
Apr7g0970 534 Gene3D Cysteine Rich Protein 162 223 - -
Apr7g0970 534 Pfam LIM domain 166 221 IPR001781 -
Apr7g0970 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 191 - -
Apr7g0970 534 ProSiteProfiles LIM domain profile. 164 224 IPR001781 -
Apr7g0970 534 MobiDBLite consensus disorder prediction 455 476 - -
Apr7g0970 534 Pfam Protein DA1 315 529 IPR022087 -
Apr7g0970 534 SMART uim 127 146 IPR003903 -
Apr7g0970 534 SMART uim 43 62 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0970 Apr-Chr7 16730657 16736401 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr7g0970 DA1-like 4.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0970 - - gmx:100817969 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0970 7 16730657 16736401 Apr7g0970 7 16730657 16736401 ECH
Apr7g0970 7 16730657 16736401 Apr3g0238 3 4389711 4396328 PCT