Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0939 ATGGAACTTAGCTTGGATTTGAGTTTAGGCTTTGTCCCCAAAACAATTTCCCTGTTTATCGGCGATGTTTCTCGGAACAGAGACAAGTGCGAGAAACTCGCCATGCTCGAGAGTTTTGTGCAAAGATTGGAAGATGAATCGAGGAAGGTTGAGGCATTTAAACGGGAGCTTCCCCTTTGCATGCTCCTCCTAAGCGATGCCATAGCAAGATTGAAAGAGGAAAAAAACAAATGTTCGGGAATGCAAGATCCACCTTTGCTTGAAGAATTCATGCCACTTAAAACCAATTCTGGAGGAAACAGAAATGGAAATGGACCCTTAACCATGGAAAATCAAATCTGTGACAAGAAGAATTGGATGAGCTCAGCTCAGCTTTGGAGCACTGAAACCAAATCGAGGAATGATGAAGATGACGGGTATGTGCCTAATAACCCAATTCAACCACGGGAGCAGAAGAACAATAGAGAAGGAGCATTTACATCATTCAATGGAAATTCGAGTGCCCCCAAGACGGATTCGCAAGCTCCGAGCTTTAGTTTGATGACTCCAGCATCTGAACTGAGTCATAGCAATTCCAAGAGTGGTTGTGGAGGAAGCAGTTCTGGCTCCTCTTTGCTCCGCGTTGAGGTGCAGAGTCATCCACAACCACCACAACATCTGCAGCAGAATCCGAGGAAACAAAGACGGTGCTGGTCGCCGGAGCTTCACCGGCGTTTTGTGGACGCGCTTCAACAACTGGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAATTGATGCAAGTGGAAGGCCTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGGAGATTCCCAGTTTCTTCAGTAGGACAGGCTATTAATAATGGGTTGTGGATGGGGCAAGAGCAATGTGGAGATAAATCAAAGGGGAGCTTGTCACAGTCTGGTTCTCCACAAGGTCCTCTTCTCTTAGGAGGGTCTGTTAAAGGTCTTTCAAGCCCTGGAAGGAACAGTGTGGATGCAGAAGACGAGCAATCAGATTGCCGGAATTGGAAAGGTGGGGTCCACCAGCACCAAGAAGTTGATATTCAGAGCCTCTAA 1104 0.4629 MELSLDLSLGFVPKTISLFIGDVSRNRDKCEKLAMLESFVQRLEDESRKVEAFKRELPLCMLLLSDAIARLKEEKNKCSGMQDPPLLEEFMPLKTNSGGNRNGNGPLTMENQICDKKNWMSSAQLWSTETKSRNDEDDGYVPNNPIQPREQKNNREGAFTSFNGNSSAPKTDSQAPSFSLMTPASELSHSNSKSGCGGSSSGSSLLRVEVQSHPQPPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVSSVGQAINNGLWMGQEQCGDKSKGSLSQSGSPQGPLLLGGSVKGLSSPGRNSVDAEDEQSDCRNWKGGVHQHQEVDIQSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0939 367 MobiDBLite consensus disorder prediction 341 357 - -
Apr7g0939 367 MobiDBLite consensus disorder prediction 210 229 - -
Apr7g0939 367 MobiDBLite consensus disorder prediction 307 322 - -
Apr7g0939 367 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 361 - -
Apr7g0939 367 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Apr7g0939 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 226 281 IPR006447 GO:0003677
Apr7g0939 367 Coils Coil 36 56 - -
Apr7g0939 367 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Apr7g0939 367 MobiDBLite consensus disorder prediction 210 228 - -
Apr7g0939 367 Gene3D - 225 282 - -
Apr7g0939 367 MobiDBLite consensus disorder prediction 146 204 - -
Apr7g0939 367 MobiDBLite consensus disorder prediction 126 204 - -
Apr7g0939 367 MobiDBLite consensus disorder prediction 301 367 - -
Apr7g0939 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Apr7g0939 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 361 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0939 Apr-Chr7 16450485 16452432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0939 1 302 G2-like Transcription Factor Family AT4G37180 40.391 5.81e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr7g0939 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0939 - - pvu:PHAVU_002G021400g 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0175 3 3152769 3155010 Apr7g0939 7 16450485 16452432 PCT