Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0919 ATGTCCCAACGATCGGTGCCGGCGCCGTTTTTGACGAAGACGTATCAGTTGGTGGATGATCCGGGGACGGATGAGGTGATATCGTGGAGTGAGAGTGGCAACACTTTTGTGGTGTGGAAACATGCAGATTTTGCTAAGGATTTGCTTCCTAATTATTTTAAGCACAATAATTTCTCCAGTTTCGTGCGCCAGCTTAACACCTATGGATTCCGAAAGATCGTGCCAGACAAATGGGAATTCGCAAACGAATATTTCAAGCGAGGCCAGAAGGAGCTGCTCTCCGAAATCAGACGCCGCAAGGCCTTGCCTCAACAGTCACCACAACCGCCGGAACCGGGAAAATCCGTTGCCGACGGTAACTCTCCATCAAAATCCGGCGCCGATGACGTGGGGTCCACCTCTACCTCTACCTCGTCCTCCGGTTCGAAGAACCCGGGATCAGTGGAAACGACAGCCCCTAATCAACTATCGAGCGAGAACGAGAAACTGAAGAAGGACAACGAAACGCTGAGCTGTGAGCTGGCACGTGCGAGGAAACAGTGCGATGAATTAATAGCGTTTCTGAGGGAGCGTCTGAATGTGGGTCCCGATCAAATCGAACGCATCATGCGGCAAGGAAGTGGTGGATGTAACCAAAACGCGGTAGGTGAAGGTGGAGGAGAGAGTTTGAAACTGTTCGGTGTTTGGTTAAAAGAGGAGAATTCTCCAGACAAAAGAAACAACCAAAAGAGGGCCCGCGAAGACCCAATGGGCTTTGGTGGGCCTGGCGTTAAGGAGTCCAAGACCGTTGTTGACTTTGGTGCCGTAAATGTCATCATGAAGAGCAGCAAGGTTTGCAACTGA 843 0.5077 MSQRSVPAPFLTKTYQLVDDPGTDEVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIRRRKALPQQSPQPPEPGKSVADGNSPSKSGADDVGSTSTSTSSSGSKNPGSVETTAPNQLSSENEKLKKDNETLSCELARARKQCDELIAFLRERLNVGPDQIERIMRQGSGGCNQNAVGEGGGESLKLFGVWLKEENSPDKRNNQKRAREDPMGFGGPGVKESKTVVDFGAVNVIMKSSKVCN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0919 280 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 Coils Coil 160 180 - -
Apr7g0919 280 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Apr7g0919 280 Gene3D - 2 100 IPR036388 -
Apr7g0919 280 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 280 - -
Apr7g0919 280 MobiDBLite consensus disorder prediction 100 166 - -
Apr7g0919 280 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0919 280 MobiDBLite consensus disorder prediction 118 158 - -
Apr7g0919 280 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 280 IPR027725 -
Apr7g0919 280 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0919 Apr-Chr7 16221065 16223593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0919 2 280 HSF AT4G36990 52.901 2.15e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr7g0919 HSF_DNA-bind 6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0919 K09419 - gmx:100791543 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0919 7 16221065 16223593 Apr7g0919 7 16221065 16223593 ECH
Apr7g0919 7 16221065 16223593 Apr3g0146 3 2603756 2607213 PCT