Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0913 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGATGTCGATACCGAGGGATTGAGGGAATATATGAGCAAGTTTGGTGAACTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACTTTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGCGAACATATTCTTGGTAATAGGACACTGGAAGTCAAAGTGGCTACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAGTCAGTAACAGAAGCTACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACCGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACCTTTGCAAGTGCAGATTCTGTGGAGAGTTTGATGTCAGAAACTCATGAACTCGGAGGTTCTGCTGTGGTCGTTGATCGAGCAACACCTAAGGATGATGATTTTAAGCCCATTGGCAGAATGCCACAGGGAGGATATGGTGCATACAATGCTTATATATCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTTCTCGGAGAACCAGTAAAAAAATTTTTGTTGGCCGTCTTCCCCCAGAGGCGACTGCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTGGCAGATCGTGTGTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTGGCAATAGATTCGGCTACACCTGTTGATGATGCAGGGCCCAGTGGACCTTATATGATGAATAGTATTGATTCCTTTGGGGGATATGGCGGTCCTGTGCGAACTTATGGGAGGATGTATGGTAGCTTGGACTTCGATGATTGGGGTTATGGAATTGGAAGACCATCAAGAACAGATTGGAGGTATAGACCCTACTAG 1074 0.4385 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMSETHELGGSAVVVDRATPKDDDFKPIGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGEPSRRTSKKIFVGRLPPEATAEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGPYMMNSIDSFGGYGGPVRTYGRMYGSLDFDDWGYGIGRPSRTDWRYRPY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0913 357 SUPERFAMILY RNA-binding domain, RBD 220 323 IPR035979 GO:0003676
Apr7g0913 357 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Apr7g0913 357 PANTHER OS01G0945800 PROTEIN 3 357 - -
Apr7g0913 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Apr7g0913 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Apr7g0913 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Apr7g0913 357 Gene3D - 88 174 IPR012677 -
Apr7g0913 357 Gene3D - 1 87 IPR012677 -
Apr7g0913 357 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Apr7g0913 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Apr7g0913 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Apr7g0913 357 SMART rrm1_1 225 296 IPR000504 GO:0003723
Apr7g0913 357 SMART rrm1_1 5 76 IPR000504 GO:0003723
Apr7g0913 357 SMART rrm1_1 93 164 IPR000504 GO:0003723
Apr7g0913 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Apr7g0913 357 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 357 - -
Apr7g0913 357 Gene3D - 216 303 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0913 Apr-Chr7 16145441 16152036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0913 17 272 Eukaryotic Initiation Factors Gene Family AT2G36660 24.138 2.79e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0913 K14411 - gmx:100795240 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0913 7 16145441 16152036 Apr7g0913 7 16145441 16152036 ECH