Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0905 ATGGCGGATGCGGAGCCTGTAACCGGGAGGCGAAGGCCCAGGGGACCGGAGGCCACCGCCCGCAGCGAAGCCTTGGAACGCCTCAAAGCTCGCCTCCGCGGCGGTCGCCGATCCGATGCCGATGGACCCCAAATCAGGTTAGAAAACCCTATCTACGACACTGTTGCCGAGGACGAATACAACGCTCTCGTCGCCAAACGCCGTGAACAGGCACGCGCTTTCATCGTCGACGATGAAGGTCTGGGATACGGCGACGAAGGCGAGGAAGAGGATTGGTCTAAGGCTGGCTTCACCCTTTCCTCTGACGAATCCGAAGGCGAATCGGAGAGACCGAAACGCAAAAGAGTCGAGAAGAAGGATCCTCAGCCGAAACGACCTTCTTCTTCGCTCTCCGCTGCCGCCGCCATGATGGGAGGTCAGAGATTGTCCTCAATGTTCACTTCGTCGGTTTTCAAGAAAAGCAGAGATGACAAGGTCTGCGATAGTATCGTCGACGATGTTATCGCGGAATTTGCACCGGACGAGACCGATAGACTGAGGCGTAGAAGGGGTCAAGCGAATTCCTCTTCAGTTTCTGTTGCCAACAATGCTTCGCGGATTAGCAATGACAAGCCATCTGCTGAATTCATCGGAGGTTCTTTGTTGACCGCAAATGATAAGTCTGAGTCGATTAAGGTTGCTGAGAATAATGGTCGTGACCTGGGATTAGAGCAAAAGTGTGAAACAGTTAAAGAAATTGAAGACTCAGTGCACGGAAGTTCTGAGAATGGACATGCGTTGGAGCCTGATGATTGCCCAATTAAGGAGGGTTTAGTTGAGGAGAAAGCAGTGAAGAACATTGAAATTGAAGTAAAACAGGACACGAAAAAGGAGGTGTTCACTTTGAATGCGAAAGTTAAAGAGGAGGAGGAGGACCCGGCATTGTGTGCTACTGCTGGTTGGAAGGAGGCGAAGAGCGTTGGTGGAGGGGATATCAATGTTGCTGATTCGAAGGATGCTTTGCATAATCAACAACACTCGGATTTTGATCTGGAGGAAGATGAGTCACTGCCTTTCTACATTTTAGATGCCTATGAGGAGTTCTATGGAGAGAATAGGGGCACTCTTTACCTGTTTGGGAAGGTCAAAACAGGGAACTTGTATCAGAGTTGCTGTGTTATTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCTAGTCATCCTTTGCACTGCACTGATGAGATGATGAGTCTCGAGAGAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCTTTAAGAAGCTTCAAGATGCAGTATCTGATGTTAAGAGTGAAATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGAAATTCCTACAGGTGAAAATTATGTGGTGAAAATCAATTATTCATTCAAGGATCCAGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTTTTGGGAACTGGTTGCAGTGCGCTTGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACATGTTTCAAAGTTTTGTACAAGCTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCAAAACATATAAGGAGTTCAACTCCTTCAAAAATCACTTCTAGGATTCCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACAACCATAAATGAAAAACAGAACATAAATGAGATTGTATCTGCATCCGTTGTGTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAAGGCTGACCCATTTTACTGTTATTCGAAAACTTGATGGGAATATATTTCCGCTGGGATTCAACAAGGAGGTTACAGACAGAAACTTAAAAGCTGGATCCAATGTTGTGTGTGTTGAAAGCAGTGAAAGAGCTCTGTTAAATCGCCTGATGTTAGAATTATACAAGTTGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAAGGTAGCAAGCAGCAACTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAGTTTGGTAGAAGAAGCAAGATTTTTGGTTCAGGAGCAGATCCTGGTATTATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATACTTGTGTTCGCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTTGCTAAAACACATCTGAACAAGTTTCGGAAGGAAGTTTCCCCACAGGATGTTCCAAAAATGTTCCAAACAGCAGAATCCTTAATGGAGCTTATTGAATATGGTGAAACGGATGCATGGTTGTCTATGGAACTAATGTTTTATTTGAGTATTCTTCCACTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGAAAAACTCTTCAGGGTGCTCGAGCTCAGAGAGTGGAGTATCTTTTGTTGCATACTTTCCATGCAAAGAAATATATCGTGCCAGACAAGTTTTCGAACCATGCAAAAGAAACAAAATTGAAACGCAGAGTAACTCCTGGTGTTGAGGATAGCAACTTTGATGAAGTAGATGATGCAAACTATGACAATGATGCTTCTGAAACTGATCCCAAAAAAGGCAGAAAGGCTCCTTCCTATGCCGGGGGACTGGTTTTAGAGCCGAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGACGGATCTTTCCCTCATCTACCATCTAGTAAAAGAACAGGAGTCTTGCCAGAGGTACTGAAAAATCTGGTGGACCGAAGGAAAAAAGTAAAGTCGTGGATAAAGAATGAAAAACAGAAGAATGATAAAGCTGATCCTATCAGAGTTCAGCAACTGGACATCCAGCAGCAAGCACTGAAACTTACTGCAAACAGTATGTATGGGTGCCTGGGGTTTTCCAATTCAAGATTTTATGCTAAGCCGCTTGCTGAGCTCATTACCCTACAAGGAAGAGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGGAAGCAAATAAAATTGCTGGAAGAGTTATTCAAGAGGTCAATAAGAAATATACATGCCTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTTCTTAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTTAAGGATGGCATCCCTTATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTACTAGCAAAAGAATTAGGAGATTTCTGCTTGACACAAATTTTGTCGGGAGGGTCATGTGAAGATGTCATTGAGTCAATCCACAGTTCTCTCATGAAGGTACAAGAAGAAATGAGGAATGGACAAGTGCCATTAGAGAAATACGTCATTACAAAGACATTGACTAAACCTCCTGATGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGCTCTAGTTCAGGCAGTGCAGGCGGCATTGCTCAACGTGCCAGACATCCTGATGAACTAAAACGAGAACAAGGGACATGGCTGATTGACATTGATTACTATTTGTCACAACAGATTCACCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGGACAAGCCCCGAAAGACTGGCTGATTGTCTAGGGCTTGATTCGTCAAAGTTTCATCATAAATCAAGTGAGGCTTCAAACGGTGATCCTACAAGCTCACTCTTGTTTGCTGCTGATGATGAGGAGAGGTATCAGGGATGTGAGCCGTTGATCTTGTCATGCCCCAGCTGCTCTGGTACTTTTGACTGCCCACCTGGGTTTAAATCTATTTGTTTATTGGGAAGTGAAAAGCCAACCAGGTCAGTCACGGAGGAATCTGAGTACAACTTCTGGTGCAAGCTGTGCTGTCCTAAATGCCCAGATGTTAAAATTTCTCCTGCAATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTTAATGTACTATAGAGGTTTAGTAATGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGATTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGCAATGGGCGTCTACATAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCATATTTTTGCCATGTGTTCGATTCTGTTTGTAGTATAGAAAAGATGGAGGCAAAATCTAGAATACCAATAGAGAAAGAGTTGATCAAAATTAGGCCGATGGTTAATCTGGCAGCATCAACGGTACAGAAAATCAGGGACCGTTGCGCCTATGGGTGGGTGAGACTGCAGGATCTGGTCATTTCAGTTTAA 4611 0.4327 MADAEPVTGRRRPRGPEATARSEALERLKARLRGGRRSDADGPQIRLENPIYDTVAEDEYNALVAKRREQARAFIVDDEGLGYGDEGEEEDWSKAGFTLSSDESEGESERPKRKRVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKVCDSIVDDVIAEFAPDETDRLRRRRGQANSSSVSVANNASRISNDKPSAEFIGGSLLTANDKSESIKVAENNGRDLGLEQKCETVKEIEDSVHGSSENGHALEPDDCPIKEGLVEEKAVKNIEIEVKQDTKKEVFTLNAKVKEEEEDPALCATAGWKEAKSVGGGDINVADSKDALHNQQHSDFDLEEDESLPFYILDAYEEFYGENRGTLYLFGKVKTGNLYQSCCVIVKNMQRCVYAIPSHPLHCTDEMMSLERDVQESRISPADFFKKLQDAVSDVKSEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPTGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLHVSKFCTSSASRRVSWCKFEVTVDSPKHIRSSTPSKITSRIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGRLTHFTVIRKLDGNIFPLGFNKEVTDRNLKAGSNVVCVESSERALLNRLMLELYKLDSDVLVGHNISGFDLDVLLHRSQACKVASSNWSKLGRLNRSTMPKFGRRSKIFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTHLNKFRKEVSPQDVPKMFQTAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAKKYIVPDKFSNHAKETKLKRRVTPGVEDSNFDEVDDANYDNDASETDPKKGRKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPHLPSSKRTGVLPEVLKNLVDRRKKVKSWIKNEKQKNDKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEEANKIAGRVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGIPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVIESIHSSLMKVQEEMRNGQVPLEKYVITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGSSSGSAGGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEASNGDPTSSLLFAADDEERYQGCEPLILSCPSCSGTFDCPPGFKSICLLGSEKPTRSVTEESEYNFWCKLCCPKCPDVKISPAMIANQVKRQAEKFVLMYYRGLVMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVFDSVCSIEKMEAKSRIPIEKELIKIRPMVNLAASTVQKIRDRCAYGWVRLQDLVISV* 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0905 1536 Pfam DNA polymerase family B 824 1291 IPR006134 GO:0000166|GO:0003677
Apr7g0905 1536 CDD DNA_polB_alpha_exo 565 816 - -
Apr7g0905 1536 MobiDBLite consensus disorder prediction 1 43 - -
Apr7g0905 1536 MobiDBLite consensus disorder prediction 175 196 - -
Apr7g0905 1536 ProSitePatterns DNA polymerase family B signature. 1059 1067 IPR017964 GO:0000166|GO:0003676
Apr7g0905 1536 MobiDBLite consensus disorder prediction 103 124 - -
Apr7g0905 1536 SUPERFAMILY Ribonuclease H-like 346 853 IPR012337 -
Apr7g0905 1536 MobiDBLite consensus disorder prediction 77 136 - -
Apr7g0905 1536 MobiDBLite consensus disorder prediction 863 904 - -
Apr7g0905 1536 CDD POLBc_alpha 897 1307 IPR045846 GO:0003887|GO:1902975
Apr7g0905 1536 Gene3D DNA Polymerase alpha, zinc finger 1330 1522 IPR038256 -
Apr7g0905 1536 Gene3D - 352 551 - -
Apr7g0905 1536 Gene3D Helix hairpin bin 966 1017 - -
Apr7g0905 1536 TIGRFAM pol2: DNA polymerase (pol2) 51 1289 - -
Apr7g0905 1536 Pfam DNA Polymerase alpha zinc finger 1331 1532 IPR015088 GO:0003887|GO:0006260
Apr7g0905 1536 SMART polmehr3 565 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr7g0905 1536 PRINTS DNA-directed DNA-polymerase family B signature 921 934 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr7g0905 1536 PRINTS DNA-directed DNA-polymerase family B signature 1004 1016 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr7g0905 1536 PRINTS DNA-directed DNA-polymerase family B signature 1057 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr7g0905 1536 MobiDBLite consensus disorder prediction 1 50 - -
Apr7g0905 1536 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Apr7g0905 1536 Gene3D - 1135 1321 IPR042087 -
Apr7g0905 1536 Gene3D - 392 518 - -
Apr7g0905 1536 Gene3D - 565 876 IPR036397 GO:0003676
Apr7g0905 1536 Coils Coil 285 305 - -
Apr7g0905 1536 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1535 - -
Apr7g0905 1536 Pfam DNA polymerase family B, exonuclease domain 382 758 IPR006133 -
Apr7g0905 1536 SUPERFAMILY DNA/RNA polymerases 849 1307 IPR043502 -
Apr7g0905 1536 Gene3D Palm domain of DNA polymerase 890 1122 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0905 Apr-Chr7 16067912 16080689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0905 2 1534 Core DNA Replication Machinery Family AT5G67100 60.526 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0905 K02320 - gmx:100798779 2565.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0905 7 16067912 16080689 Apr7g0905 7 16067912 16080689 ECH