Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0892 ATGGACGGTGAAGGAGGAGAGAGAGAGAGAAACATGGGAACGAAGAAGAGAGGGGTGATAGAAGGAGAGAGAAGATACAAAGGAATAAGGATGAGAAAGTGGGGAAAGTGGGTCGCTGAAATTAGGGAACCCAATAAGCGTTCAAGGATTTGGCTTGGTTCTTATTCAACCCCTGTCGCCGCCGCACGTGCCTATGACACCGCCGTTTTCTATCTCCGGGGACCCTCTGCGCGCCTAAACTTCCCGGAGCTTCTCGCCGGGGAAGGGCACGCCGTTGTTGCTGGATGTGACATGTCTGCGGCTTCTATTAGGAAGAAAGCCACCGAGGTCGGTGCTAGAGTCGATGCTCTCCAAGCAACCCTTCACCACCATCACCACCACCACCCACGTGTGGCGCCGCCGCCGGCCCTTCTCTCCGGCGGTGGTGGGAGTTCCGGGGATTTCGCGGAGCGGGTTGACTTGAATAAGGTACCCGAACCCGAGAGTTCGGACTGCGAGTGGGACATGAATTGA 513 0.5634 MDGEGGERERNMGTKKRGVIEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAGEGHAVVAGCDMSAASIRKKATEVGARVDALQATLHHHHHHHPRVAPPPALLSGGGGSSGDFAERVDLNKVPEPESSDCEWDMN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0892 170 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Apr7g0892 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 164 - -
Apr7g0892 170 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Apr7g0892 170 MobiDBLite consensus disorder prediction 121 170 - -
Apr7g0892 170 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Apr7g0892 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 9 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0892 Apr-Chr7 15943880 15944999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0892 13 168 AP2-EREBP Transcription Factor Family AT5G67190 57.062 6.40e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr7g0892 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0892 K09286 - gmx:100527066 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0892 7 15943880 15944999 Apr7g0892 7 15943880 15944999 ECH
Apr7g0892 7 15943880 15944999 Apr3g0121 3 2072750 2073157 PCT