Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0845 ATGAGTTGCAACGGCTGCCGTGTCCTTAGAAAGGGTTGCAGCGAGTCATGTATCTTGCGACCTTGTCTTCAATGGATCGACACCCCCGAAGCCCAAGGCCATGCCACTGTCTTCGTAGCCAAATTCTTCGGCCGTGCCGATCTCATGTCCTTCATTTCCAACGTCCCTGAACCTCAACGCCCTGCTCTGTTTCAATCTCTGCTGTTTGAAGCGTGTGGACGAACGGTCAACCCTGTCAACGGTGCCGTCGGGCTTTTATGGACCGGCAACTGGCACGTGTGCCAGGCCGCGGTTGAAACGGTGCTCCGTGGTGGCACCCTCAGGCCCTTGCCGGAGCTTCTTGGCTTAGATGCTCCTTCTTCCACCGCCGACGAAGCCTCCGAAGGGGAAGTCACCTGCACCGACATGTGGAGGCTCCGAGATCCGAACCAGAATTTCCGGTTCGGGAACTCGAGGTCTGAGAAGGTCGCTTCCGGCGGTAAACGCAAGCGATCGGAGGAACTCGCCAAGATTCAGACGGCAACTGATCTTAATCTCCGGTTAACGCCGACTTTTCTGCAGAACGTGTCGACCTACGGCTGCCGGCGGGAAATTCGCCGGCCGGGGTCGCCGTCGATGAACTCGGAGGAATCGGTGACGACGACGGCGTGTTTGGAAAGCGGGATCGGAAATCACTACGCTCCCGACGGAGACCGGAAAGTGCTGAACCTTTTCATTTGA 720 0.575 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELLGLDAPSSTADEASEGEVTCTDMWRLRDPNQNFRFGNSRSEKVASGGKRKRSEELAKIQTATDLNLRLTPTFLQNVSTYGCRREIRRPGSPSMNSEESVTTTACLESGIGNHYAPDGDRKVLNLFI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0845 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Apr7g0845 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Apr7g0845 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 239 - -
Apr7g0845 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0845 Apr-Chr7 15489923 15491233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0845 1 238 AS2 family AT3G49940 55.859 9.98e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr7g0845 LOB 6.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0845 - - gmx:100802764 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0069 3 1199966 1201269 Apr7g0845 7 15489923 15491233 ECH
Apr5g1468 5 18716020 18716584 Apr7g0845 7 15489923 15491233 ECH
Apr7g0845 7 15489923 15491233 Apr7g0845 7 15489923 15491233 ECH
Apr7g0845 7 15489923 15491233 Apr8g2418 8 34374240 34375604 PCT
Apr3g0069 3 1199966 1201269 Apr7g0845 7 15489923 15491233 PCT