Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0827 ATGGGGAAGAAACAGCACAGCAAAGATAGAATGTTCATCACCAAAACCGAATGGGCAACGGAATGGGGTGGCGCTAAATCCAAACAAACTCGCACCCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACGTTTACGCCGTTTGAGTATCCGGTTTGCACAGCTGATGGCAGTGTTTTCGATGTTATGAATATAACTCCCTATATTATTAAGTATGGTAAAAATCCTGTCACTGGAGCTCCTCTCAAGCAGCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAATGTGTTCTGCTATGAGGCCGTTAAAGAGTTAAACATTAAGACGAAAAACTGGAAGGAACTCCTCACTGATGAGCCATTCACTAAGGATGACCTTATAACAATTCAGAATCCTAATGCGCTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTTAAAGTTGATGATGAAGAACTGCAGAAAATGAGTTCAGATCCAACCTATAACATAAATATGTCCGGTGATATCAAGCAAATGCTTCAAGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCACTGCATGGTGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCTAGGTCACAGGTTAAAGAAGATTCCAAATCAAATTCAAATGAAGAGGCCAAAGCTCTTCAGATATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGCAGAAGTGCAGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATATGGCTGGTGACAGAGCGCCAGTGAATGCAAAGATGGTAAAAAGTCGTTTCACAACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATATGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTAAACATTGAGCTACATTGTGATATAACACCCAGGACATGTGAGAACTTCATCACCCTTTGTGAACGTGGTTATTATAATGGAGTTGCTTTTCATAGAAACATCAGGAATTTTATGATACAGGGTGGTGATCCTACTGGTACTGGTCGAGGAGGTGAATCAATATGGGGAAAGCCTTTCAAGGATGAACTTAACTCTAAATTAATTCACTCTGGAAGGGGTGTAGTCAGCATGGCAAACAGTGGCCCACACACTAATGGTTCCCAATTTTTCATCTTATACAAGTCTGCAACTCATTTAAACTTCAAACACACAGTTTTTGGAGTAGTTGTCGGTGGCTTGACTACACTGGCAGCAATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTCTGGAGGAGATCAAGATAACCAGTGTCACAGTTTTTGTCAATCCTTACTTAGAACCAGATGAAGAAGAAGAGCAGGCTAATGCCAAAGATAAGAATGCAGCGGATGAAGATAATGAAAAGGTTGGCTCATGGTATACCAATCCTGGCGCTGGAACATCTGAATCTGGAGGTACGGGGGTTGGTAGTGGTGTAGGCAAGTACTTGAAAGCTAGGAATACACAAGCTACATCTGCTACTGTTGACACCAGTACAGCCGTTGTAGGAAAGAAAAGAAAAGTGGGAGTTGTCAGCGGTGAATTTAAAGATTTTTCTGCATGA 1788 0.4161 MGKKQHSKDRMFITKTEWATEWGGAKSKQTRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYIIKYGKNPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSFKVDDEELQKMSSDPTYNINMSGDIKQMLQELGTEKGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSNSNEEAKALQIFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHMAGDRAPVNAKMVKSRFTTGAASRSFTSTSYDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSATHLNFKHTVFGVVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTVFVNPYLEPDEEEEQANAKDKNAADEDNEKVGSWYTNPGAGTSESGGTGVGSGVGKYLKARNTQATSATVDTSTAVVGKKRKVGVVSGEFKDFSA* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0827 595 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Apr7g0827 595 SUPERFAMILY RING/U-box 37 104 - -
Apr7g0827 595 MobiDBLite consensus disorder prediction 535 549 - -
Apr7g0827 595 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 594 - -
Apr7g0827 595 CDD cyclophilin_RING 350 508 - -
Apr7g0827 595 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Apr7g0827 595 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 594 IPR044666 -
Apr7g0827 595 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Apr7g0827 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Apr7g0827 595 Gene3D - 330 515 IPR029000 -
Apr7g0827 595 MobiDBLite consensus disorder prediction 512 528 - -
Apr7g0827 595 SUPERFAMILY Cyclophilin-like 350 506 IPR029000 -
Apr7g0827 595 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Apr7g0827 595 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 MobiDBLite consensus disorder prediction 507 555 - -
Apr7g0827 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Apr7g0827 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0827 Apr-Chr7 15296120 15302084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0827 1 595 U-box Gene Family AT5G67530 76.206 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0827 K10598 - gmx:100819923 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0827 7 15296120 15302084 Apr7g0827 7 15296120 15302084 ECH