Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0822 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCACTGAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGAACCATACTTACAGACCCAGAATTCAGTTCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTACCAACCCCCAAAGTTGACAATAACCACACAGCCTTGAGTACTGTAGTTCAACGTGACAAAGAACTTGCAGATTCCAAGCCTCTAGCAGTTTCTGGTGGAACATCTCCTAATACAAAGGAACAGATATCAAGGTTGGATAATCTTATATTAGAGTCCATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCAGCCATTGCTGCATATATAGAGGATCAATACTGGTCTCCGCCAACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCATATGGTAGCGAGTGGAAAATTAATTAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACAATATCTGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAAGCCCAAAGACTCTCCAAAAGCAGAGAAGACTGATGTCAACATCCTTTCAAAATCTGAAATTGATGCAGAACTATCAAAAATGAAGGGTGTAACAGCTCAAGAGGTATCAGCAGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAGGCCCTAAAATGCAAAACACTTCATATTTGA 879 0.4391 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKVDNNHTALSTVVQRDKELADSKPLAVSGGTSPNTKEQISRLDNLILESIIKLKEPKGSDRAAIAAYIEDQYWSPPTLRKLLSTKLKHMVASGKLIKVKHKYRIATNLTISEKRRCSSLLLLEGKPKDSPKAEKTDVNILSKSEIDAELSKMKGVTAQEVSAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKTLHI* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0822 292 Coils Coil 240 274 - -
Apr7g0822 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Apr7g0822 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g0822 292 PANTHER MYB TRANSCRIPTION FACTOR 1 292 - -
Apr7g0822 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Apr7g0822 292 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
Apr7g0822 292 CDD SANT_TRF 6 57 - -
Apr7g0822 292 Gene3D - 2 59 - -
Apr7g0822 292 Pfam linker histone H1 and H5 family 122 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g0822 292 Gene3D - 113 194 IPR036388 -
Apr7g0822 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Apr7g0822 292 SMART sant 4 59 IPR001005 -
Apr7g0822 292 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Apr7g0822 292 SUPERFAMILY "Winged helix" DNA-binding domain 117 194 IPR036390 -
Apr7g0822 292 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0822 Apr-Chr7 15265421 15270153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0822 1 288 Single Myb Histone (SMH) Gene Family AT5G67580 57.679 4.60e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr7g0822 Linker_histone 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0822 K09422 - gmx:778165 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0822 7 15265421 15270153 Apr3g0053 3 927780 933981 PCT