Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0793 ATGATGGCAATTGCATCCACCAACTACATGCCTGAACTTGGAATGGAAGATGCCACCTTCTTTGATCAATACCCGATGGATTCTTTTGCATACCCACTTGATGACTTTGACTTTGAGTCCTTCTCCGGGTCCCCAGAGAGCAATTCCTCTTATCAGTGTTTCAACTACGAAAGAACACCAAATAGTTTCCCGGCTGAAAGTCCTGATCAATCCGTTACCCCTCCAAGACCTACTCCAAGACCAACCAAGAAGCTCAAGACATCCAACACTTCACCTTCTCCTTCCTCCCAAATTATTTCTTTTGGGCCCTTCAATGCACCATCACTCGCTTCACAGCAATTCCACAACATGAATTCCCATGCGGAGCCTAAAATCGAGAAAGGTTGTGGAGGGAACATGGATTTCGCAGCATTCATTTCTAAAGGTTCACACGAGGACAAAAGTTTCTTAAATCACGGTAATCAAGCCAACCAGGTTGCCATGACCACCAGGAACCCAATCCAAGCTCAAGAACACGTGTTAGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAGAGATTCATTGCTCTTTCGGCCATCCTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATAAAGTATTTGAAACACCTACAAGAACGGGTGCAGAATCTGGAAGAGCGAGCAGCTAAGAAAACAGTTGGATCCGAAGTCATAGTTAAGAGATCTATTCTCTTCACGAACGATGATAATTCATCATCCGATGAAAATTTTGATGGCTACTTTGACCATTTACTCCCCGAAATCGAAGTAAGAGTTTCTGGAAAAGACGTTCTCGTCAGAACTCAAGGCGACAAACACAGTGGACGTACGGCAATGATACTGAGCGAATTAGAAAAGCTTAGTCTCAATGTCCAGAGTAGCAGTTTTTTGCCCTTTGGAAATAACAATATCGATGTTACTATCATTGCTCAGATGAACAAGGAAAACTGCATTACAGCGAAGGATCTTCTAGGAAAGCTACGACAGGCTTTGAGGCAGTTTATTTGA 1044 0.4377 MMAIASTNYMPELGMEDATFFDQYPMDSFAYPLDDFDFESFSGSPESNSSYQCFNYERTPNSFPAESPDQSVTPPRPTPRPTKKLKTSNTSPSPSSQIISFGPFNAPSLASQQFHNMNSHAEPKIEKGCGGNMDFAAFISKGSHEDKSFLNHGNQANQVAMTTRNPIQAQEHVLAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYLKHLQERVQNLEERAAKKTVGSEVIVKRSILFTNDDNSSSDENFDGYFDHLLPEIEVRVSGKDVLVRTQGDKHSGRTAMILSELEKLSLNVQSSSFLPFGNNNIDVTIIAQMNKENCITAKDLLGKLRQALRQFI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0793 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Apr7g0793 347 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 346 - -
Apr7g0793 347 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Apr7g0793 347 SMART finulus 173 222 IPR011598 GO:0046983
Apr7g0793 347 Gene3D - 168 236 IPR036638 GO:0046983
Apr7g0793 347 PANTHER BHLH TRANSCRIPTION FACTOR 1 346 - -
Apr7g0793 347 MobiDBLite consensus disorder prediction 53 69 - -
Apr7g0793 347 CDD bHLH_AtNAI1_like 169 241 - -
Apr7g0793 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 227 IPR036638 GO:0046983
Apr7g0793 347 MobiDBLite consensus disorder prediction 53 96 - -
Apr7g0793 347 MobiDBLite consensus disorder prediction 82 96 - -
Apr7g0793 347 Coils Coil 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0793 Apr-Chr7 14906190 14907688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0793 2 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.088 8.19e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g0793 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0793 - - gmx:100791810 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0793 7 14906190 14907688 Apr7g0793 7 14906190 14907688 ECH
Apr7g0793 7 14906190 14907688 Apr3g0024 3 435207 437533 PCT