Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0788 ATGGCTGCAGAGATTGGCCTTGTGTCTATGACCCAGATCCAAAAATTATCACAACCACACCACCACAAAAATCAACCTCAACCAAACCCTAACTCCACCACCGCCTCATCTACTTGGATGTGGAACCCTAGGGAGCAGCAAGAAGTGGAAGATGAGGACGCGTGGGTGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCAAGGTCTTACACCTGCACCTTCTGCAGAAGAGAGTTCCGGTCAGCCCAAGCTCTTGGTGGCCACATGAACGTGCACCGCCGTGACCGTGCTCGCCTCCACCAAGCCCCTCCACCCAACCCCATCTCTTCCCTTCCCACACCACCTTTCATCAACATCCCTCATCAAGACCTTGTTGCAAATGCTGGATTGTGCCTCCTCTACCATTTGCCATCAAGCCCTAGTGCACCCTTCCCTCCACCTACTACTACCACTCTCAATGCTAATGGGGACTCTCCCTCTACTCTTCTCTCTATCTCTTCCTTTTCTCCAAACAACTTTATGATGCAAACTTGCTCGCCATCCCTTAATTTTCCAGGTGCAGTAGTCTCTACTGGGATCAATAGTACTGTTTCTTCTATCTGCTGTAACTCTACCAAACTGGACCAACCTTCAACTTCATCTATTGATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTACGGCTCGGGCACAAGCCAAAACCAACTTCATAA 735 0.4993 MAAEIGLVSMTQIQKLSQPHHHKNQPQPNPNSTTASSTWMWNPREQQEVEDEDAWVVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPPNPISSLPTPPFINIPHQDLVANAGLCLLYHLPSSPSAPFPPPTTTTLNANGDSPSTLLSISSFSPNNFMMQTCSPSLNFPGAVVSTGINSTVSSICCNSTKLDQPSTSSIDNGHLEELDLELRLGHKPKPTS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0788 244 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Apr7g0788 244 Pfam C2H2-type zinc finger 77 101 - -
Apr7g0788 244 PANTHER OS07G0101800 PROTEIN 40 237 - -
Apr7g0788 244 Gene3D Classic Zinc Finger 68 111 - -
Apr7g0788 244 MobiDBLite consensus disorder prediction 16 38 - -
Apr7g0788 244 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 40 237 - -
Apr7g0788 244 SMART c2h2final6 77 99 IPR013087 -
Apr7g0788 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Apr7g0788 244 SUPERFAMILY beta-beta-alpha zinc fingers 74 104 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0788 Apr-Chr7 14839096 14839830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0788 36 240 C2H2 Transcription Factor Family AT4G17810 40.952 1.13e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g0788 zf-C2H2_6 5.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0788 - - gmx:100818142 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0788 7 14839096 14839830 Apr7g0788 7 14839096 14839830 ECH
Apr7g0788 7 14839096 14839830 Apr3g0018 3 293929 294654 PCT