Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0782 ATGCCAGTTCCACTTGCCCCTTACCCGACACCCCCTCCCCTACCTCTTTATACGCCCCCACCAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAATTTTTTGCTTTATCCAGTTGGAGCCACCTCTGTGTGTTGCGCTGTTTGCAATGCAGTCACAGCAGTGCCACCACCAGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGCTGTCACACTTTTCTCATGTACATCCGTGGAGCCACAAGTGTGCAATGCTCTTGTTGTCACACGGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTTTGCAGTTTTGTAACATCAGTTGGGGCCTCAACAAGCACCACTGAGCAGAAATTCAGCACCTAA 444 0.491 MPVPLAPYPTPPPLPLYTPPPNGAQSQLVCSGCRNFLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTFLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGASTSTTEQKFST* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0782 147 PANTHER PROTEIN LOL1 1 144 - -
Apr7g0782 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Apr7g0782 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Apr7g0782 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Apr7g0782 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Apr7g0782 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Apr7g0782 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Apr7g0782 147 PANTHER PROTEIN LSD1 1 144 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0782 Apr-Chr7 14753873 14758173 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Apr7g0782 zf-LSD1 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0782 - - gmx:100788563 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0782 7 14753873 14758173 Apr3g0010 3 164181 166718 PCT