Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0746 ATGCACTGTGTTGCGGAGAGAACGCGCTCTAGAAAAGCCCTAATTGACAAACAACAAGTGAAACAACAGAGCAGTAGCAGCAACAACAGCAATGGGGGTGACGTTGTTGGTCTAAGTTACGATGATGAAGATGTTTTCTGGGGGCAAACTAGTGGCTCCGGAAGTGAGTCTTCAGATTCTTATTTGGTTGAGGGTTTGGATGAAAATGACTACGACGATGAGGTACGCTTAGTGGAAAATAGTGATGGTGATGTGGGAAGAAGAAGAAGAAAGAGTAACGGGAAGTGGAGAAGGGAAATGAACATTGACATGGGTGAGTTTGGAGTGAGGAGAAGAAAAGTGTTTGGGTTAGATATATTGATAAGCAGGAATGCAAACGAAGAGGGTAAGTGTGCAGCACAGAGGACACGTTCACATTTTCGTAGGAGCAAGAAATTGATGTTTGGGACTTTAAGTCGACCTATTTGCCTTGATGAAGAAGAGGATCAGGATCAGGAGGATCACTCTGTCTTGTTTTCTCTTGCACGTGAGAAGAGAGAGTTAGAGGAGCTTTGGGTTGAGATGGAGTGTGCTCTTAAATCTAGCCAATGCAATTCTGGGGATTGTTGGTTTGAAGAGGGAAGTGGTTCTGTTGAAGAAAAACATAAAGATTGCAAGGGGGAAGAAGGGTTTGAGTTTGCAAAGAAGAAACACAGCCATGATGTAGAAGATTGTGAAGTGGTTAATGTTCTTCAGGATCTTATCTGTGGTAAGGAGGAGGTGCCTCTGGATTCAGAGCCCGATCCAAATGTGGATTTGCCACCTTTGAGGTTTACTCTTCAAACAAAGGAACGAAAGACAGTTGAAAAATCAGAACAGGAGAAAGAATTAGATGAACTGTGGATTGAGATGGATTACTGTCTTTATGGTGACCAACAAAACTCTGTTCCTGCTTCTCAGGTTCAAAGTAACACTGATTCTGATCATGATCAGTTTCCCATGGATGAAGTTAATACACTTACTCTTTGTCGTCAAGGGAAGCACCATCTCATTCTTAATGAGGAAATTGGACTTGTATGTGCATATTGCTTGCATGTCGACTTGGAGATCAAGTATATTGTACCTCCTTTTTGTGAAAATCCATGGGGAAGGTCGCACAGGAGAGACTCTTGCACTTTGGACCATGGGAACCACTCTGCCTTTGATGAGCTTCAGCATATAGCTGCTGGCCATGATGATTATAACCTCTGTAATCACTCTGGGACTGTTTGGGATATAATTCCTGGGCTCAAAAAAACTATGTATCCTCATCAGTGTGAAGCATTTGAATTTCTCTGGAGGAATTTAGCTGGTGGAATTTTTCTTGATAAATTGAAAGGACAAAAGGAATTTCCTGGTGCCAGTGGGTGCATTATATCTCATGCCCCTGGCACTGGGAAAACCCGACTTGCTATTGTATTTCTCCAGGCTTACATGGAGTTGTATACGACATGCAGACCGATGATTATTGCTCCTAAAGGGATGCTTCTTACATGGGAAGAGGAGTTTAAAACTTGGGAGGTTGACATCCCCTTTCATAATTTGAACAGTTCTGACTACACTGGCAAGGAGAGCGAGATAGTTATGAATATTATTGGGGATTGTGGTCGAAATATATCACGTCCTGCAGCCAAGTTACTTTGTCGGAAAGCTAAGTTGTATTCCTGGAAGTGTAACAAAAGCATCTTGGGAATTAGTTACACACTGTTTGAGCAACTTACTAGGTCCAAGAACAAGGATTTCAGAAAAGTCCTTCTTGAACATCCTGGTTTATTAGTTCTTGATGAGGGTCATACTCCTCGTAATTCAGGAACTCTTTTATTGAAAGCTGTCTCAAAAATCCAGACCAAAAGACGCATCATCCTCTCTGGAACACCCTTTCAGAATAATTTTGATGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGTACGTAATTCATCTGAAGGCAAGGTGGTATTTGATGACAGGTGGGGGCTGCCAAAAAATCAAAGCAAAGGGAAATGGGTGTATCTAACCAATTCTTTTGGCAAAGTTATTGATGATAGTAGAAGATTTAAGATATTGGAAGAAATTAGAAAAATGATTCATCCTTTTGTTCATGTACATCGAGGAACCATACTGCAAGAGAGTCTACCTGGGTTGAGGAAATTAGTAGTTATTTTAAAGCCAACACAGTTGCAGAAGGAAATTTTGGAGGATATTCAGAAACAGAGGAAAAGTAGCTTGAATGTGCTGAAACTAGAATACTTGGAGTCTGTAACTGCCGTTCATCCTGCGCTCTACGATCTTTCTGAAGGCAAGAAATTGAACAGAAATAGATTAAATCCGGATGATGGTGTCAAAACAAAGTTCTTAATAGAACTTATCAGGGTTAGTGAGCTTGTGAAGGAAAAAGTATTGGTTTTTAGTGAGCATATTGATCCTTTGAAGCTTGTGGCAAGCCAGCTTAAATATCATTTTGGTTGGACTGAAGGAGTCGAGGTGTTACGAATTCATGGAAGAGTTGAAGCAAAGCTGCGTCAAGCTTCAATGAAAGCTTTTAACGATCCCAATAGCAAAGTAAGGGTAATGCTAGCATCAATTAAGGCTTGTTATGAAGGTATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTGTGGAATCCTTCAGTGGAGTGGCAAGCAATATGTCGCGCTTACCGGCTTGGCCAAAGGAAATTTGTGTACACTTATCGTCTCATCACAGTGGGGACAAGGGATGAGGAAAAATGTTGTCGTCAAGCTGAGAAAGATCAATTATCTGAATTGGTTTTCTTTAATTCTGATGGGGCTCAGCATTGTCAAAATTTGTCATCTGCAGAATTGGAAGATCGAATTTTGGAAAACATGGTTCAGCAAGACAAGTTTGGACATATATTTGAGAAAGTAGCTGTTAGCTATTAA 2961 0.4097 MHCVAERTRSRKALIDKQQVKQQSSSSNNSNGGDVVGLSYDDEDVFWGQTSGSGSESSDSYLVEGLDENDYDDEVRLVENSDGDVGRRRRKSNGKWRREMNIDMGEFGVRRRKVFGLDILISRNANEEGKCAAQRTRSHFRRSKKLMFGTLSRPICLDEEEDQDQEDHSVLFSLAREKRELEELWVEMECALKSSQCNSGDCWFEEGSGSVEEKHKDCKGEEGFEFAKKKHSHDVEDCEVVNVLQDLICGKEEVPLDSEPDPNVDLPPLRFTLQTKERKTVEKSEQEKELDELWIEMDYCLYGDQQNSVPASQVQSNTDSDHDQFPMDEVNTLTLCRQGKHHLILNEEIGLVCAYCLHVDLEIKYIVPPFCENPWGRSHRRDSCTLDHGNHSAFDELQHIAAGHDDYNLCNHSGTVWDIIPGLKKTMYPHQCEAFEFLWRNLAGGIFLDKLKGQKEFPGASGCIISHAPGTGKTRLAIVFLQAYMELYTTCRPMIIAPKGMLLTWEEEFKTWEVDIPFHNLNSSDYTGKESEIVMNIIGDCGRNISRPAAKLLCRKAKLYSWKCNKSILGISYTLFEQLTRSKNKDFRKVLLEHPGLLVLDEGHTPRNSGTLLLKAVSKIQTKRRIILSGTPFQNNFDELYNTLCLARPKFAVRNSSEGKVVFDDRWGLPKNQSKGKWVYLTNSFGKVIDDSRRFKILEEIRKMIHPFVHVHRGTILQESLPGLRKLVVILKPTQLQKEILEDIQKQRKSSLNVLKLEYLESVTAVHPALYDLSEGKKLNRNRLNPDDGVKTKFLIELIRVSELVKEKVLVFSEHIDPLKLVASQLKYHFGWTEGVEVLRIHGRVEAKLRQASMKAFNDPNSKVRVMLASIKACYEGISLVGASRVVLLDVVWNPSVEWQAICRAYRLGQRKFVYTYRLITVGTRDEEKCCRQAEKDQLSELVFFNSDGAQHCQNLSSAELEDRILENMVQQDKFGHIFEKVAVSY* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0746 986 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 16 984 - -
Apr7g0746 986 MobiDBLite consensus disorder prediction 1 37 - -
Apr7g0746 986 MobiDBLite consensus disorder prediction 1 16 - -
Apr7g0746 986 CDD SF2_C_SNF 791 920 - -
Apr7g0746 986 Gene3D - 405 671 IPR038718 -
Apr7g0746 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 944 IPR027417 -
Apr7g0746 986 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 797 957 IPR001650 -
Apr7g0746 986 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 650 IPR014001 -
Apr7g0746 986 Pfam Helicase conserved C-terminal domain 791 909 IPR001650 -
Apr7g0746 986 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 16 984 IPR044567 GO:0080188
Apr7g0746 986 MobiDBLite consensus disorder prediction 17 35 - -
Apr7g0746 986 Gene3D - 722 981 IPR027417 -
Apr7g0746 986 SMART helicmild6 820 909 IPR001650 -
Apr7g0746 986 SMART ultradead3 423 663 IPR014001 -
Apr7g0746 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 652 IPR027417 -
Apr7g0746 986 Pfam SNF2-related domain 436 776 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0746 Apr-Chr7 14334332 14338009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0746 800 963 RAD5 or RAD16-like Gene Family AT5G43530 34.857 6.18e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr7g0746 SNF2_N 9.2e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0746 K10875 - jre:109003751 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0746 7 14334332 14338009 Apr7g0746 7 14334332 14338009 ECH