Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0710 ATGACGGTTGATGAACAAGACTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAATCCCCCTCTCATCCCCTCTTCTCCTCACAAACCTTCTTGGAACCACCCTTTCACTTCTGCAGAACGAGATTCGGAAACATGCAGAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGACGTGAACCGTTTACCTTCTGGGGTTGATTGTGAAGAAGAAGCGGGTGTTTCATCTCCGAACAGCACTGTTTCTAGCGTGAGTGGTAAGCGTAGCGAGAGGGAGAACAATGGGGAAGAGCTCGACACAGACAGAGCTTGTTCCAGAGGGATCAGTGACGAAGAAGACGGTGAAACCTCTAGGAAGAAGCTTAGGCTCTCTAAAGACCAGTCAATTATTCTCGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCCAAACAAAAACTGGCCCTGGCAAAGCAATTGGGTCTTCGAGCAAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACGAAGCTGAAGCAAACGGAGGTAGACTGTGAGTTTTTGAAAAGGTGTTGTGAGAATCTGACGGAGGAAAATAGGAGGTTGCAGAAGGAAGTGCAGGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCAGATGACCCCACCCACAACCCTCACCATGTGCCCCTCTTGTGAGCGCGTAGCTGTTCCGCACTCTGCCGTTGATGCTGCCACGCGTCACCATCCCATAGCCCCGGCTCATCATCGGGCTTTCCCGATTGGCCCATGGGCTACTTCAGCTGCTGCTATTCCGCACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 843 0.5125 MTVDEQDLGLSLSLSFPHNPPLIPSSPHKPSWNHPFTSAERDSETCRGEAGSFLRGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSERENNGEELDTDRACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPHSAVDAATRHHPIAPAHHRAFPIGPWATSAAAIPHRPFDALRPRS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0710 280 MobiDBLite consensus disorder prediction 68 121 - -
Apr7g0710 280 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Apr7g0710 280 Gene3D - 122 172 - -
Apr7g0710 280 Coils Coil 173 210 - -
Apr7g0710 280 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Apr7g0710 280 CDD homeodomain 118 175 IPR001356 GO:0003677
Apr7g0710 280 Pfam Homeobox associated leucine zipper 174 208 IPR003106 GO:0006355|GO:0043565
Apr7g0710 280 SMART halz 174 217 IPR003106 GO:0006355|GO:0043565
Apr7g0710 280 SUPERFAMILY Homeodomain-like 108 175 IPR009057 -
Apr7g0710 280 MobiDBLite consensus disorder prediction 73 88 - -
Apr7g0710 280 SMART HOX_1 116 178 IPR001356 GO:0003677
Apr7g0710 280 Pfam Homeodomain 118 172 IPR001356 GO:0003677
Apr7g0710 280 MobiDBLite consensus disorder prediction 89 121 - -
Apr7g0710 280 Pfam HD-ZIP protein N terminus 4 92 IPR006712 GO:0005634
Apr7g0710 280 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 270 - -
Apr7g0710 280 CDD bZIP 167 206 - -
Apr7g0710 280 MobiDBLite consensus disorder prediction 1 49 - -
Apr7g0710 280 PANTHER - 2 270 - -
Apr7g0710 280 PRINTS Lambda-repressor HTH signature 145 154 IPR000047 GO:0003677
Apr7g0710 280 PRINTS Lambda-repressor HTH signature 154 170 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0710 Apr-Chr7 13960796 13962750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0710 1 280 Homeobox Transcription Factor Family AT4G16780 63.729 1.30e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr7g0710 HD-ZIP_N 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0710 K09338 - gmx:100783851 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0710 7 13960796 13962750 Apr10g1631 10 28907098 28909072 PCT