Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0634 ATGGCCTCCATTCTTCAAGCTTGTACCTTGTTGCTTGCTTTTACAACGATGTTCATGTTCATGGGAGATAGAGCAATAGCTGGAGGAATATTTCGACCCAGTCAGTGGGCTCTTGCCCATGCCACTTTTTATGGTGATGAGACTGCTTCTGCTACCATGGGAGGAGCATGTGGGTACGGGAATTTGTTTCAAAATGGTTATGGGACAGATACAGCGGCATTAAGCTCGACGTTGTTCAACAATGGTTATGCATGCGGGACATGTTACCAGATAAAATGCTACCATTCCAGTGCATGTTACAAAAATGTGCCCTTCACCACGGTCACTGCCACCAACCTCTGCCCTCCAAATTGGGCCGAACCTTCCAATGATGGTGGCTGGTGCAACCCACCTCGAGTGCATTTTGACATGTCCAAACCCGCCTTCATGAAAATCGCGCAATGGAAAGCTGGCATAGTTCCAGTTATGTACCGCAGAGTGCCATGTGTAAGGAAGGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTACTGGCTATTGGTGTACGTGATGAATGTTGGAGGAGGAGGAGATATTTCAAGCATGTCTGTGAAAGGAAGCAGAAGTGGATGGATTAGCATGAGCCACAATTGGGGGGCTTCATATCAAGCATTTGCAACTCTAAGAGGCCAAGCTCTTTCTTTCAGGGTTACTTCTTACACCACCAAAGAGACCATTATTGCATGGAATGTTGCTCCTTCCAATTGGAATGTGGGACTAACTTATTCCACAACCGTCAACTTCCACTGA 789 0.4677 MASILQACTLLLAFTTMFMFMGDRAIAGGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYHSSACYKNVPFTTVTATNLCPPNWAEPSNDGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRKGGLRFSFQGNGYWLLVYVMNVGGGGDISSMSVKGSRSGWISMSHNWGASYQAFATLRGQALSFRVTSYTTKETIIAWNVAPSNWNVGLTYSTTVNFH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0634 262 Gene3D - 27 162 IPR036908 -
Apr7g0634 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Apr7g0634 262 PANTHER EXPANSIN-A15 2 262 IPR002963 GO:0009664
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Apr7g0634 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Apr7g0634 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Apr7g0634 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Apr7g0634 262 Gene3D - 168 262 IPR036749 -
Apr7g0634 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Apr7g0634 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Apr7g0634 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Apr7g0634 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Apr7g0634 262 SMART dpbb_1 71 157 IPR007112 -
Apr7g0634 262 PANTHER EXPANSIN 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0634 Apr-Chr7 13054263 13055765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0634 1 262 Expansin Gene Family AT1G12560 65.779 3.08e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0634 - - gmx:100798322 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0634 7 13054263 13055765 Apr7g0634 7 13054263 13055765 ECH
Apr10g1527 10 27727087 27728246 Apr7g0634 7 13054263 13055765 PCT