Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0629 ATGCAAGAACCAAACTTGGGAATGATGGGTGGTTTAAGCGGAGAGGTATCCGGCGATCACCACCGCCAACTGAAGGCGGAGATAGCCAGTCATCCGCTCTATGAGCAGCTTCTGGCTGCACACGTGGCATGCCTCCGTGTTGCCACTCCCATCGATCAGTTACCACTCATCGACGCTCAGTTATCTCAGTCTCACCATATTCTTCGCTCTTATGTCTCACACCACACCCAAGCCCATTCTCTTTCCCCTCATCATCGCCAAGAACTTGACAACTTTCTGGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTACAACAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCATGCCGTGATATCGAAAATACCTTACAAGCTCTCACAGGAGTCAGTTTGGGAGAAGGAACTGGGGCAACAATGTCGGATGATGAAGATGATATGCCGATGGATTTTTCTTTAGATCAATCTAGTGCTGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGAAGAGCTGGGAAATTACCAGGTGATACCACTTCGGTGTTAAAGAACTGGTGGCAGCAACATGCCAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAACTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAGCGCAAAAGGTAG 864 0.4641 MQEPNLGMMGGLSGEVSGDHHRQLKAEIASHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHILRSYVSHHTQAHSLSPHHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDMPMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0629 287 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Apr7g0629 287 SUPERFAMILY Homeodomain-like 212 277 IPR009057 -
Apr7g0629 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 287 - -
Apr7g0629 287 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Apr7g0629 287 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Apr7g0629 287 SMART KNOX2_2 79 134 IPR005541 GO:0003677|GO:0005634
Apr7g0629 287 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
Apr7g0629 287 Gene3D - 209 283 - -
Apr7g0629 287 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 287 - -
Apr7g0629 287 SMART HOX_1 212 277 IPR001356 GO:0003677
Apr7g0629 287 Pfam KNOX2 domain 83 133 IPR005541 GO:0003677|GO:0005634
Apr7g0629 287 CDD homeodomain 213 274 IPR001356 GO:0003677
Apr7g0629 287 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0629 Apr-Chr7 12964691 12971090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0629 1 286 Homeobox Transcription Factor Family AT1G62990 78.912 3.89e-173 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr7g0629 KNOX2 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0629 - - gmx:100808872 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0629 7 12964691 12971090 Apr7g0629 7 12964691 12971090 ECH
Apr10g1523 10 27680787 27685533 Apr7g0629 7 12964691 12971090 PCT