Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0622 ATGAACACTTTCAAACCATCATTTCATGAGTTAAACTACGGAATTGGAGAGGCATCTTCTTCTTCTGAAACAAGTTCCTCCAGCCATAGAATTATTAGGACTTCTCACTCAGACGAAGAAGTCATATTAGCATCGGCGCGCCCAAAGAAGCGAGCGGGGCGAAGAGTATTCAATGAGACAAGACATCCTGTGTACCGAGGAGTGCGACGCAGGAACAAGAACAAGTGGGTTTGCGAGATGCGTGTCCCAAACAACAACTCTAGAATTTGGCTCGGGACATACCCAACACCCGAAATGGCTGCGCGTGCACACGACGTTGCCGCGCTCGCGCTTCGGGGAAAATCAGCGTGCCTCAACTTCGCTGACTCCCTGTGGCGGTTGCCGTTGCCGGCGTCCACCTGTGCGGAGGATATAAGAAGAGCGGCGGTGGAAGCTGCCGAGTCATTTGCGGCTGAGGACAGCCAGCACCATCTGAAGCAGAGTGCCAAGGTCACAAGTGTTGATTATGAAGTTTGCAGCGTCGGGGATAACATGGTTGTTGAAGATGCAAACGATAAGCCCCTGCAACAAGAAAGGATTTATGTGGATGAAGTTCCGGCGGCGTCAGAGCTTGAAGACTTGCATGAATTGCTTCTGAGCATCGCGGATGAGCCTCTAATGTCTCCTCCACCTTGTGCGAGAGATGGTTGGGGCTGGAACGACGTGGAGATATTTGATGCTGAGGTGTCATTATGGAATTTTTCTATGTGA 750 0.508 MNTFKPSFHELNYGIGEASSSSETSSSSHRIIRTSHSDEEVILASARPKKRAGRRVFNETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSLWRLPLPASTCAEDIRRAAVEAAESFAAEDSQHHLKQSAKVTSVDYEVCSVGDNMVVEDANDKPLQQERIYVDEVPAASELEDLHELLLSIADEPLMSPPPCARDGWGWNDVEIFDAEVSLWNFSM* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0622 249 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Apr7g0622 249 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Apr7g0622 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 249 - -
Apr7g0622 249 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Apr7g0622 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 249 IPR045277 GO:0003700
Apr7g0622 249 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Apr7g0622 249 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Apr7g0622 249 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Apr7g0622 249 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Apr7g0622 249 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0622 Apr-Chr7 12869631 12870380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0622 19 247 AP2-EREBP Transcription Factor Family AT4G25470 46.957 1.15e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr7g0622 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0622 - - gmx:100789097 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0622 7 12869631 12870380 Apr7g0622 7 12869631 12870380 ECH
Apr10g1516 10 27622399 27623476 Apr7g0622 7 12869631 12870380 PCT