Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0583 ATGGGATTTCCAGTGGGGTACACGGAGCTAGTGTTGCCAAAGCTGTTTCTGCATCTTCTATCGGTGTTGGGCTTCATCAGGAAACTCATAACCATCCTCTTATGCTACATGGGCCTCCACGATTTTCTGGAGCCCGACATTGCGTGGGCCCAAGGGGTGCCCGAATTCCAATCCGTGTCAGCCCTCATCATCCGGGAAATCCTCCCCGTCGTGAAGTTCTCGGAGCTGGCGGTGGTGGACCCGCCGGAGAGTTGTGCCGTTTGCCTCTACGAGTTCGAGGGGAAGGACGAGATCCGACGGCTCACGAACTGCCGCCACATATTCCACAGAGGATGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGTCCTTTGTGCCGAACACCTTTTATACCGCACGATATGCAAGCTACTTTCAATGATAGACTATGGGCAGCTTCGGGTATTCCTGAATTTTATTACTACGACCATGAATAG 480 0.5271 MGFPVGYTELVLPKLFLHLLSVLGFIRKLITILLCYMGLHDFLEPDIAWAQGVPEFQSVSALIIREILPVVKFSELAVVDPPESCAVCLYEFEGKDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHDMQATFNDRLWAASGIPEFYYYDHE* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0583 159 Pfam Ring finger domain 84 128 IPR001841 -
Apr7g0583 159 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 155 - -
Apr7g0583 159 PANTHER BRH1 RING FINGER PROTEIN 1 155 - -
Apr7g0583 159 CDD RING-H2 85 128 - -
Apr7g0583 159 SMART ring_2 85 127 IPR001841 -
Apr7g0583 159 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Apr7g0583 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 135 IPR013083 -
Apr7g0583 159 SUPERFAMILY RING/U-box 69 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0583 Apr-Chr7 12374770 12375545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0583 1 149 C3H Transcription Factor Family AT1G63840 59.236 1.80e-59 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0583 K16281 - gmx:102665617 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0583 7 12374770 12375545 Apr7g0583 7 12374770 12375545 ECH
Apr7g0583 7 12374770 12375545 Apr2g1221 2 18423050 18423613 PCT