Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0572 ATGGGTCACCATTCATGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGGCCGGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCATGGATCAAAAAGAAAATTCGAAAGCCTTCGGTGCCATCATCAATCACCACAGCACAAAGTGTTGATCACCCCCAGTTCAATTATAATTCCAATCAACTAGATCACTTTGCTACCCAAGAAAATGTAACAGCAAAGCCACCGGTACAAGAAACCTTATTTTCCTCCACGTGCCCCCTATTTATGTTTGACACTAGTTCACTAGATGGGACAGCAACAGACACCAATGTACGACCAGAACTGTTCCAAGATTCTATGGGTTTGAGCTCTGAAACGTGGAACTTGAGCCATCATCAAGTTCAAGCCCTTCATCCTCAACCAGCAGCAACTTTTACAACAGCTGCAGTTATGGATACTACGAATTATCTGCCACCATTGGTAGATAACGTGGAAAACATGGTGCCAAATATTGAAGTGCAATCTTGTAGTTTGGACGAGGAAGGAGAAATAGCATTGGAGTGTCTGCAGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACAGTGTCCAAGCTTTCTTTTCTGGGACAGTGTTGAAGGACATCTTGGAGGGGAAGAACTAGGACCAAACTCGTCAAATATGGGAACCAATACACTTTCTCCTTTTCCTTCCTCTTTATGA 951 0.4374 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVPSSITTAQSVDHPQFNYNSNQLDHFATQENVTAKPPVQETLFSSTCPLFMFDTSSLDGTATDTNVRPELFQDSMGLSSETWNLSHHQVQALHPQPAATFTTAAVMDTTNYLPPLVDNVENMVPNIEVQSCSLDEEGEIALECLQRQELNEWVENQQQCPSFLFWDSVEGHLGGEELGPNSSNMGTNTLSPFPSSL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0572 316 Gene3D - 69 137 - -
Apr7g0572 316 Gene3D - 6 66 - -
Apr7g0572 316 CDD SANT 69 112 IPR001005 -
Apr7g0572 316 PANTHER MYB TRANSCRIPTION FACTOR 1 315 - -
Apr7g0572 316 MobiDBLite consensus disorder prediction 299 316 - -
Apr7g0572 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr7g0572 316 CDD SANT 17 61 IPR001005 -
Apr7g0572 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr7g0572 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr7g0572 316 MobiDBLite consensus disorder prediction 294 316 - -
Apr7g0572 316 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr7g0572 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr7g0572 316 SMART sant 13 63 IPR001005 -
Apr7g0572 316 SMART sant 66 114 IPR001005 -
Apr7g0572 316 PANTHER MYB DOMAIN PROTEIN 55 1 315 - -
Apr7g0572 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr7g0572 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0572 Apr-Chr7 12189955 12192205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0572 1 305 MYB Transcription Factor Family AT1G63910 49.593 1.26e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr7g0572 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0572 K09422 K02947 gmx:100803556 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0572 7 12189955 12192205 Apr7g0572 7 12189955 12192205 ECH
Apr7g0572 7 12189955 12192205 Apr2g1230 2 18521157 18533787 PCT