Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0563 ATGGCGAAGGAGCTGGAGAAGAAAGCCAAGGAAGCGTTCTTTGACGACGACTTCGCTCTTGCCGTTGATCTCTACTCTCAAGCCATCCAATTGGAACCCAACAACGCCCATTTCTTTGCCGACCGGGCCCAAGCCCATATTAAGCTCAAGGCTTTCCCTGAAGCCGTTTCCGATGCAAACAAAGCTATTCAATTAAGCCCTTCATTGCCCAAAGCCTATCTTCGTAAAGCGACTGCTTGTATTCAACTAGAAGAATATCATACTGCAAAGGTAGCACTACAAAACGGTGCCTCTTTTGCACAGGATGATTCCAGATTCATCAAGTTGATTCAAGACTGTGATCGATATATCGCAGAGGAATCAAATGGTGTTACTAGCACCTTATCATCAAATGGCGCAACATCTGTACCATCTGGTAATGATTCCCATTTGTGTGATAGAAATGATGAGACACCTAAAGAAGCTGAAAGAGACAGTTCGATATCCCAAATCAATGAAGTTGCCCCAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCGGATGAAGTGGTTGTGACAATATTTGCAAAAGGAATAAGAGCAAAGGATGTGGTTGTTGACTTTGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGGAAGATAATACCTGATAAGTGCAAAGTTGAGGTGTTGTCAACCAAAATTGAAATCCGTCTTACAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATACACTACCCCAAAAAATAAATATGCCTATAGTTCAATCTGAAAGGCCCACATACCCATCGTCAAAGCCAAGGACAAGAGATTGGGATAAGTTGGAAGCCCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAGTTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCTATGAGCAAGTCTTATTTGGAGTCACATGGAACAGTGCTGTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGTAGGCAGTCCTCCAGAAGGTATGGAGTTAAAAAAATGGGAGTATTGA 1119 0.4182 MAKELEKKAKEAFFDDDFALAVDLYSQAIQLEPNNAHFFADRAQAHIKLKAFPEAVSDANKAIQLSPSLPKAYLRKATACIQLEEYHTAKVALQNGASFAQDDSRFIKLIQDCDRYIAEESNGVTSTLSSNGATSVPSGNDSHLCDRNDETPKEAERDSSISQINEVAPNRPKYRHEYYQKPDEVVVTIFAKGIRAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPDKCKVEVLSTKIEIRLTKAEAINWTSLEYSKDTLPQKINMPIVQSERPTYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSYLESHGTVLSTDWKEVGSKKVVGSPPEGMELKKWEY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0563 372 Pfam SGS domain 290 370 IPR007699 -
Apr7g0563 372 Gene3D - 172 263 IPR008978 -
Apr7g0563 372 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Apr7g0563 372 SMART tpr_5 36 69 IPR019734 GO:0005515
Apr7g0563 372 SMART tpr_5 2 35 IPR019734 GO:0005515
Apr7g0563 372 SMART tpr_5 70 103 IPR019734 GO:0005515
Apr7g0563 372 MobiDBLite consensus disorder prediction 124 160 - -
Apr7g0563 372 ProSiteProfiles SGS domain profile. 281 372 IPR007699 -
Apr7g0563 372 PANTHER PROTEIN SGT1 HOMOLOG A 1 372 - -
Apr7g0563 372 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Apr7g0563 372 CDD p23_CS_SGT1_like 177 260 - -
Apr7g0563 372 ProSiteProfiles CS domain profile. 171 260 IPR007052 -
Apr7g0563 372 MobiDBLite consensus disorder prediction 143 160 - -
Apr7g0563 372 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Apr7g0563 372 SUPERFAMILY HSP20-like chaperones 168 267 IPR008978 -
Apr7g0563 372 PANTHER PROTEIN SGT1 HOMOLOG 1 372 IPR044563 GO:0051087
Apr7g0563 372 MobiDBLite consensus disorder prediction 124 142 - -
Apr7g0563 372 Pfam CS domain 175 250 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0563 Apr-Chr7 12078804 12083210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0563 1 101 U-box Gene Family AT3G07370 30.693 5.39e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0563 K12795 - gmx:100784022 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0563 7 12078804 12083210 Apr7g0563 7 12078804 12083210 ECH