Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0543 ATGACACCGGCACCCACCAACCACACTCACCACCTCGAACACACCCAACTCTTCATACCCGCAGAACAACACCCCCCAATCAAACACCCATACCCACGACTCGTGAGGATAACTGTCACTGACACCGATGCCACCGACTCCTCCAGCGACGAAGAACAACCCTTCCGCACTCTCACGCGCCACCGACACAAGAAGTTTGTCAACGAGATTTCCATCGTGTCCTGCACCGCCGAGAACGACCGCGTCGTTTCGAAGAAGAGAAGCAGGACAAAGTCCAAGGCCAGAGCTTCAGAGTCTCGGCAAGTGCCCTCCGGCAAGAAGTTCCGAGGAGTGAGACAGAGGCCTTGGGGGAAATGGGCCGCGGAAATACGAGACCCTTCGCGACGCGTCCGGTTATGGTTGGGTACCTTCGATACTGCTGAGGAAGCTGCCATGGTGTACGACAACGCGGCTATTAAGCTGCGTGGACCCGACGCGCTCACCAACTTCATAACGCCACCTGTCACGTGGCAGGACTCGTCGGAGCATAAAGACCCGCCGGCGCCGGTTAACGGGTACATTTCGGGGGACGAATCTCAAAGCAAGAATTTGTTTTCTCCCACTTCCGTGCTTCAGTGTTGTTCGTTGTCCGAGGAAGCAGAGTCCACCAAATCGGAGTCACCGTTTTCGATTCCAAGCGATATAGAATTTGACTTCCGAGGTTGTTGGTCGGCGCCGGATGTGTTTGACAACTTGGATAACGTGCCGGAAAGTTTGTTGTTCTGCGATGATTGGCACGGTGTGTTTCTCACTTCTTGTGAGGATTTCGGCTTCAAAAGTTGGTATACGCGCAGAAATCGTGACTTCTTCCAAGACATCGACGATTTATTTGTCTCAGATCCTCTTCTTGCTCTTTGA 897 0.534 MTPAPTNHTHHLEHTQLFIPAEQHPPIKHPYPRLVRITVTDTDATDSSSDEEQPFRTLTRHRHKKFVNEISIVSCTAENDRVVSKKRSRTKSKARASESRQVPSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFITPPVTWQDSSEHKDPPAPVNGYISGDESQSKNLFSPTSVLQCCSLSEEAESTKSESPFSIPSDIEFDFRGCWSAPDVFDNLDNVPESLLFCDDWHGVFLTSCEDFGFKSWYTRRNRDFFQDIDDLFVSDPLLAL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0543 298 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 295 - -
Apr7g0543 298 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 295 - -
Apr7g0543 298 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Apr7g0543 298 MobiDBLite consensus disorder prediction 83 111 - -
Apr7g0543 298 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Apr7g0543 298 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0543 Apr-Chr7 11862764 11864297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0543 28 298 AP2-EREBP Transcription Factor Family AT4G11140 44.027 5.59e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr7g0543 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0543 - - vra:106777252 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0543 7 11862764 11864297 Apr7g0543 7 11862764 11864297 ECH
Apr7g0543 7 11862764 11864297 Apr2g1257 2 18827606 18828514 PCT