Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0521 ATGGCAACCTTGGTGAAGTTGTGTCTATTGTCGTTCTTTCTTTTCCCTCTCAAAGGCGCAAGAGGAGAAATCACTTGCGCTACCATGTCATGCGGTGAAATCGATATTCGGTTTCCTTTTAGTTTGAAAGGAGCCAATCAAAGTGGTCGGTGTAGCTACCCCAGATTCCAAGTTTCGTGCGACAACCTTAGCCGAACCATTCTTAACCTCCATGGTTCGGGGGATTTGGTCGTTAAAAGCATCAATTACGAGGACCAAACGGTTAAGGTTAACGACCCCAATGGGTGCCTCCCAGAACGCTTTTTGCACAACTTGAGCCTTACTCTCTCCCCATTATTCACGTTTGACGCCACCGTTTACGACCTCACTTTCCTTCGTTGTCCCTCCAACATAACCGAGTCATATCCATTCCCAACAATTTCTTGCCTCCGAGATGGTAACACTAGAACCTCGAACTCCTCATCGGTCATATTTTCGTGGTGGCCACTTAGTGACTCATCACCTTGGCACGAGTGCGATGTAATATCCTCAACTTTTGTTCCCATTCCAAACGCAAACGCAAACGCGGCCACGCCACTCTTCTTGCCTGATCTTAACAACGATATTGAGTTGAAGTGGAAGGAGCCCGCGTGTGGGAATTGTGCTTCTCGTGGCCAAGCTTGTGGGTTCACCCGTGATACAAGTCTTCAAGTTCGATGCTTCGCTGCTCCCAACGAAAGCCAAGGTCTTTCAAGAAGTGCGAAATATGGGTTGACTATAGGAGTGGGAATACCTGGACTCTTGTGTTTGACTGGGCTTTGCTGCTTTGTGTGTAGCAAGTTCAACATGTACACACATCGTCACCAGGCCAGGCCCAGCGCTGAGCTTCCGAGTTCGATTATGACCCTACAACCATCCTCATTCGTAATGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCCAAGACTCTTATTGGTGACAGTGGGCGCTTACCGAATCCGAATGATAGCACGTGCCCAATATGCTTGGGTGAATACGAGCCCAAGGAGATTTTGAGGACCATACCTGAATGCAACCACTATTTTCATGCACAATGCATAGATGAGTGGCTCAAGATGAACGCTTCGTGCCCTTTATGCAGGAATTCACCCGATGCTTCCTCTACTGTTACCCCTTCTTCTTCTACTTTATCTATCTTTTCGTCTTCTCCGTAG 1194 0.4765 MATLVKLCLLSFFLFPLKGARGEITCATMSCGEIDIRFPFSLKGANQSGRCSYPRFQVSCDNLSRTILNLHGSGDLVVKSINYEDQTVKVNDPNGCLPERFLHNLSLTLSPLFTFDATVYDLTFLRCPSNITESYPFPTISCLRDGNTRTSNSSSVIFSWWPLSDSSPWHECDVISSTFVPIPNANANAATPLFLPDLNNDIELKWKEPACGNCASRGQACGFTRDTSLQVRCFAAPNESQGLSRSAKYGLTIGVGIPGLLCLTGLCCFVCSKFNMYTHRHQARPSAELPSSIMTLQPSSFVMGLNGPEIEKFPKTLIGDSGRLPNPNDSTCPICLGEYEPKEILRTIPECNHYFHAQCIDEWLKMNASCPLCRNSPDASSTVTPSSSTLSIFSSSP* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0521 397 Pfam Wall-associated receptor kinase galacturonan-binding 26 92 IPR025287 GO:0030247
Apr7g0521 397 MobiDBLite consensus disorder prediction 376 397 - -
Apr7g0521 397 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Apr7g0521 397 SUPERFAMILY RING/U-box 326 379 - -
Apr7g0521 397 CDD RING-H2_PA-TM-RING 331 374 - -
Apr7g0521 397 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 395 - -
Apr7g0521 397 Pfam Ring finger domain 331 374 IPR001841 -
Apr7g0521 397 Pfam Wall-associated receptor kinase C-terminal 142 235 IPR032872 -
Apr7g0521 397 SMART ring_2 332 373 IPR001841 -
Apr7g0521 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 379 IPR013083 -
Apr7g0521 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0521 Apr-Chr7 11639359 11641116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0521 26 377 C3H Transcription Factor Family AT2G46495 33.799 6.32e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0521 - - cam:101497311 380.563