Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0487 ATGGAAGAACAAAGCAGCATGCAAGAACATGTCATGGCTCCAACAATATCATATCGAGGAGTTCGAAAACGAAAATGGGGCAAATGGGTATCAGAAATTCGTGAGCCAGGGAAGAAAAGTAGAATATGGTTAGGGAGCTATGAAGCACCAGAAATGGCTGCAGCAGCATATGACGTGGCAGCGTTGCACCTCAGAGGACGCGCTGCAAGGCTCAATTTTCCTGAATTGGTTGAGTCTCTTCCAAGGCCAGCAAGTTCTAGAGCTGAGGATGTGCAAGCTGCAGCTCATCAAGCAGCAATGAGGTTCAAGAGATCACCAATAGTGTTGTCATCTAAGGAGTGTAGCAATAATAACAATAGCAATATTAACAATGGTAATAATAAGGGTAGTGTTGATCCTGTGAGGGTGGGGTTGTCACCTAGCCAAATTCAGGCCATTAATGAGTCACCATTGGATTCACCAAAGATGTGGATGCAAATGGCTGAGGCACTCAAGTTTGGGTTTGATGAGTCTATGATGATGGTGTGTTGTGGTGGTGGTGATGATTGTGCTTTGGAGTTGAGTGGATGGGAAGAAATACAGCATGAGTCCTTGTGGGACTCATGA 606 0.4505 MEEQSSMQEHVMAPTISYRGVRKRKWGKWVSEIREPGKKSRIWLGSYEAPEMAAAAYDVAALHLRGRAARLNFPELVESLPRPASSRAEDVQAAAHQAAMRFKRSPIVLSSKECSNNNNSNINNGNNKGSVDPVRVGLSPSQIQAINESPLDSPKMWMQMAEALKFGFDESMMMVCCGGGDDCALELSGWEEIQHESLWDS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0487 201 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Apr7g0487 201 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 163 - -
Apr7g0487 201 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Apr7g0487 201 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Apr7g0487 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0487 Apr-Chr7 11222406 11223011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0487 17 200 AP2-EREBP Transcription Factor Family AT1G71450 48.649 4.21e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr7g0487 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0487 - - gmx:100788567 250.751