Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0480 ATGCTATGCTCCAGCAAGCTTGTGCGTTGTGTGTTCTCCAAATGTTGTTTGTTACGGAACCTTAGTACTTCAAGTGCAGAACTAGAAACCATAATCACAAACATTGATGCACAGATACGTGCTCTTTCCACGCAAGGCAACATTGAAGAAGCTCTTTCACTTCTTTACACCCACTCTTCTCTGTCCCTTCAAAACTATGCATCTCTGTTCCATGCTTGTGCTCAGAAAAAGTGCCTCCAACAAGGAATGGCTCTGCACCATTACATGCTTCACAAAGATCCCACATTTCAAAATGATCTCTTTGTCACTAATCACATCATAAATATGTACTGCAAGTGTGGCCACTTAGTCTATGCCCATTACATGTTTGATCAAATGTCACATAGAAATATTGTTTCTTGGACTGCTCTCATTTCAGGATATGCACAATCTGGTCTAATCCGAGAGTGTTTCTCTCTCTTCTCTGGTTTGTTGACTTGTTTCCGCCCCAATGAATTTGCTTTTGCAAGTTTGCTTAGCGCGTGCGAGGGCCATGACATTAAATGTGGCATGCAGGTACATGCAGTTGCTTTGAAAATTTCATTGGATGCCAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGTGCTCTGGTTCCCCTGGAGGTTATAATCAGACAGCAGATGATGCCTGGACCGTGTTCAAGGCAATGAAGTTCCGAAATCTCATATCTTGGAATTCAATGATTGCAGGTTTTCAATTTTGTGGACTTGGGGACAGAGCCATTTGCCTGTTTACACACATGTACTGCAATGGAATTGAGTTTGACCGCCCCACACTACTTAGTGTCTTCTCTTCCTTGAATGAATGTAGTGATTTTGATGACATTAACATACATCTTAGGAAATGTTTTCAATTGCACTGTCTCACTATTAAAAGTGGGCTTATTTCAGAAATTGAAGTGATAACAGCATTGATGAAATCCTATGCAAATCTTGGAGGACACATTTCTGACTGTTATAGGATCTTCCTTGAAACAAGTGGCCAACAGGATATTGTGTTATGGACTGCTCTTATTTCTGTGTTTGCAGAACGGGATCCTGAGCAGGCTTTCCTCCTTTTCTGTCAACTTCATCATGAAAATTTTTTGCCAGACTGGCATACATTCTCAATTGCCTTAAAAGCTTGTGCATACTTAGTGACTGAGAAGCATGCCATGGCCATTCACACACAAGTAATTAAAAAAGGGTTTCAGGAAGCTACAGTTCTTTCTAATGCCTTGATACATGCTTATGCCAGGTGTGGTTCCTTAGCATTGTCTAAACAAGTATTCAATGAAATGTGTTACCGTGATTTGGTTTCCTGGAATTCAATGCTCAAGTCTTATGCCATACACGGGCAAGCTAAAGATGCACTGGAGCTCTTACGGCAAATGAATGTTCGTCCAGATTCTTCAACCTTCGTTGCGCTTCTCTCAGCTTGCAGTCATGTTGGACTGGTTGATGAAGGAGTGAAATTGTTTAACTCTATGTCTGGTGATCACGGTATTGTTCCTCAACTAGACCATTATTCCTGCATGGTTGATCTTTATGGACGAGCTGGGAAGATAATTGAGGCTGAGGAGTTGATACGTAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCATGGTGAAATTCACGTGGCCAAACTAGCAGCTGATAAATTTAAGGAGTTACAGCCTAAAAATTCATTGGGATATGTACAAATGTCAAACATATATTCCTCAGGTGGTAGTTTTATTGAAGCTGGCTCGATTAGGAAGGAAATGAGAGCCTCTAAGGTGAGAAAAGAACCAGGATTAAGCTGGGTTGAGATTGGGAAGCAGGTTCATGAGTTTGCCTCTGGTGGTCAACATCATCCACAAAGGGGAGCCATATTAAGCCGGCTTGAGATATTGATTGGGCAATTGAAAGAGATGGGTTATGTACCAGATCTTAGCTTAGCCTTGTATGACACGGAAATGGAGCACAAAGAAGACCAATTGTTTCATCACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAATGAAGGAAGTTTGCCTTATGGTGGGAATGTCATCAAAATAATGAAAAACATTCGTATTTGTGTGGACTGTCATAACTTCATGAAATTAGCATCATATGTATTTCAGAAGGAGATTGTTGTGAGAGATTCAAACCGCTTTCACCACTTCAAATATGCAACATGCTCTTGTAATGATTATTGGTAA 2268 0.4048 MLCSSKLVRCVFSKCCLLRNLSTSSAELETIITNIDAQIRALSTQGNIEEALSLLYTHSSLSLQNYASLFHACAQKKCLQQGMALHHYMLHKDPTFQNDLFVTNHIINMYCKCGHLVYAHYMFDQMSHRNIVSWTALISGYAQSGLIRECFSLFSGLLTCFRPNEFAFASLLSACEGHDIKCGMQVHAVALKISLDANVYVANALITMYSKCSGSPGGYNQTADDAWTVFKAMKFRNLISWNSMIAGFQFCGLGDRAICLFTHMYCNGIEFDRPTLLSVFSSLNECSDFDDINIHLRKCFQLHCLTIKSGLISEIEVITALMKSYANLGGHISDCYRIFLETSGQQDIVLWTALISVFAERDPEQAFLLFCQLHHENFLPDWHTFSIALKACAYLVTEKHAMAIHTQVIKKGFQEATVLSNALIHAYARCGSLALSKQVFNEMCYRDLVSWNSMLKSYAIHGQAKDALELLRQMNVRPDSSTFVALLSACSHVGLVDEGVKLFNSMSGDHGIVPQLDHYSCMVDLYGRAGKIIEAEELIRKMPMKPDSVIWSSLLGSCRKHGEIHVAKLAADKFKELQPKNSLGYVQMSNIYSSGGSFIEAGSIRKEMRASKVRKEPGLSWVEIGKQVHEFASGGQHHPQRGAILSRLEILIGQLKEMGYVPDLSLALYDTEMEHKEDQLFHHSEKMALVFAIMNEGSLPYGGNVIKIMKNIRICVDCHNFMKLASYVFQKEIVVRDSNRFHHFKYATCSCNDYW* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0480 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 477 IPR002885 -
Apr7g0480 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Apr7g0480 755 PANTHER - 26 674 - -
Apr7g0480 755 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 26 674 - -
Apr7g0480 755 Gene3D Tetratricopeptide repeat domain 395 474 IPR011990 GO:0005515
Apr7g0480 755 Gene3D Tetratricopeptide repeat domain 179 292 IPR011990 GO:0005515
Apr7g0480 755 Pfam PPR repeat 239 269 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 518 543 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 421 445 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 482 507 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 132 155 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 104 131 IPR002885 -
Apr7g0480 755 Pfam PPR repeat 449 474 IPR002885 -
Apr7g0480 755 Pfam E motif 561 623 IPR046848 -
Apr7g0480 755 Gene3D Tetratricopeptide repeat domain 475 640 IPR011990 GO:0005515
Apr7g0480 755 Gene3D Tetratricopeptide repeat domain 33 178 IPR011990 GO:0005515
Apr7g0480 755 Gene3D Tetratricopeptide repeat domain 293 394 IPR011990 GO:0005515
Apr7g0480 755 Pfam DYW family of nucleic acid deaminases 659 755 IPR032867 GO:0008270
Apr7g0480 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 514 IPR002885 -
Apr7g0480 755 TIGRFAM PPR: pentatricopeptide repeat domain 519 542 IPR002885 -
Apr7g0480 755 TIGRFAM PPR: pentatricopeptide repeat domain 449 474 IPR002885 -
Apr7g0480 755 TIGRFAM PPR: pentatricopeptide repeat domain 104 132 IPR002885 -
Apr7g0480 755 TIGRFAM PPR: pentatricopeptide repeat domain 482 514 IPR002885 -
Apr7g0480 755 TIGRFAM PPR: pentatricopeptide repeat domain 132 155 IPR002885 -
Apr7g0480 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0480 Apr-Chr7 11158944 11161379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0480 66 755 Glycoside Hydrolase AT3G49170 35.846 6.37e-136 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0480 - - gmx:100799117 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0480 7 11158944 11161379 Apr8g2270 8 33128268 33135178 PCT