Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0470 ATGGATGAGGGAAAGCATAAATCAAGGAAGGAAGATTATGAAGTGAAAGAAGGGGATTCTAAGAAGAATCACCGTGATCGAGATCGTGATAGGGGTAAGGATAGAAGTGATGGGAGGCACAGGGATAGGGAGAAGAGGGACCGTGAGTCCCGACGACATGAAAGAGAGAAGAGTACTGATTCTGAAGACATGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATAGGACACGACTTCAGGATGTGGACAGGGAAAGAGCTCGAGACAAGAAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAGAGGGAAGACAGGGAAAGAGAGAGAACAGACAGAATAAGGGAGAAAGAAAGAGAGAGGGGAAGAAAAGAGGATAAGGAGAGGAGCAGAGAGAGAGAGAGAGAGAGGGAGAGGGAAAGGAGGGATCACGAGAGGGAGAAGGAAAAGGAAAGAGAAAGGGGGAGGAGAGCACGAGAGAGAGAGAAGCGTAGGGAAGTTGATAGTGATTACAGTGATGGTGAATCCAAGGAGAGAGATAGGAAGCGGCATAGGAAAGAGGATGATGATTACAAGAGGAGAGAGAGGGAAAAGAGTCTCAGCAAGCCAAACAGGCAATTAGAGGAGCAAGAAGCAAGTCCAAGAAAAAAAAATGGTGGAGATGACTCAGATACCAAAGACGAAGAGAGAAAACCTTCTCGTGAAGAGGAGATGGAGGATGAACAAAGGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAACTAAGGAGGAAGAAGGAAGAAGCCGAAAGAGAAAAGCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACGCTTGAAGGGGAATCTGATGATGAAGAAGGATCGGGTACTGGGAAGCAGGATGCAGCTATGGATGTAGATGAGGATGACAAACCTGCTGATCAAGAACCTAGAGATTTGATGGTGGCAGATGTTGATAATGGGACAGTTGCATCTGATTTACAGGATGGAACTGCTGGTGCTCCTGCAGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCATCAGTTTCTGATAAAGATGTTGATTTGAAATCCAAAGATAAAGGGGATGAGCATAGTCGTGGTGCACAGTCTAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATCTTGAAATCGAGAAAGATCCATTGGATGAGGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTAGTTGATCACTCAAAGATTGATTATAAGCCATTCAAGAAAATTTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTACTAGCAAAATTTTGGAGACAATAAAAAAGTTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCTCCTACAAGGGAACTTGTTCAGCAAATCCACAGTGACATAAAAAAGTTCACTAAGGTAATGGGTCTCAGATGTGTGCCTGTGTATGGGGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCTGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTAGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAGATCACACGAATTGTTCAGAATATTCAGCCGGATCGACAAACGGTTCTGTTCTCTGCTACTTTTCCCCGTCAGGTTGAAATTCTGGCTCGAAAGGTTTTGAATAAACCTGTTGAAATACAAGTGGGTGGAAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAAATCTTGATATTTGTCCACTCACAGGAAAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTCCATGGGGCTAAGGACCAGACAGACCGAGAATCCACAATATCTGATTTTAAAAGCAATGTATGCAGTTTGTTGGTTGCAACAAGTGTTGCTGCCCGGGGATTAGATGTTAAGGAGCTTGAGTTGGTGATCAATTTTGATGTTCCGAACCACTATGAAGATTATGTTCATCGTGTTGGGCGTACTGGCCGAGCTGGCCGAAAGGGATGTTCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGTTGAAGGCCTTGGAACTATCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAACAAGCACATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGAGGTGATATTTCACAGCATCCTGCACTTGCTCAGATTTTGGCTGCCACTAAAGCGAGTGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGATGATTTCAAATGGTGGATTGCCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCAACAGTTTTGCCTGGAACTGGGCTACCCCTTGCTGCAAATGATGGGGCAGCCCGAGCAGCATTAGCTGCTATAAACTTGCAACACAATTTAGCAAAAATACAATCAGAAGCATTGCCAGAACATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGGTGGAAAGTTACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAAATCCCGGGACCTGGGGAACGCAAACTCTACTTATTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAACGTGTACTGGAAGATATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCTGGCAAATACTCTGTTGTGTAA 3432 0.44 MDEGKHKSRKEDYEVKEGDSKKNHRDRDRDRGKDRSDGRHRDREKRDRESRRHEREKSTDSEDMYDRDREKRKDKDKDRTRLQDVDRERARDKKREREREREREREDRERERTDRIREKERERGRKEDKERSRERERERERERRDHEREKEKERERGRRAREREKRREVDSDYSDGESKERDRKRHRKEDDDYKRREREKSLSKPNRQLEEQEASPRKKNGGDDSDTKDEERKPSREEEMEDEQRRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGSGTGKQDAAMDVDEDDKPADQEPRDLMVADVDNGTVASDLQDGTAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSVSDKDVDLKSKDKGDEHSRGAQSRKGSNKSIGRIIPGEESDSDYADLEIEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYKPFKKIFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLTSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIQPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCSLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCSITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKASAPALPTPISAAQMISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0470 1143 SMART ultradead3 524 729 IPR014001 -
Apr7g0470 1143 Pfam DEAD/DEAH box helicase 530 701 IPR011545 GO:0003676|GO:0005524
Apr7g0470 1143 MobiDBLite consensus disorder prediction 383 402 - -
Apr7g0470 1143 Coils Coil 233 274 - -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 290 328 - -
Apr7g0470 1143 Coils Coil 87 114 - -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 374 425 - -
Apr7g0470 1143 CDD DEADc_DDX46 494 715 - -
Apr7g0470 1143 Gene3D - 457 714 IPR027417 -
Apr7g0470 1143 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 660 668 IPR000629 -
Apr7g0470 1143 SMART helicmild6 766 847 IPR001650 -
Apr7g0470 1143 Coils Coil 119 163 - -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 1 282 - -
Apr7g0470 1143 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 170 960 - -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 1 352 - -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 921 935 - -
Apr7g0470 1143 CDD SF2_C_DEAD 726 856 - -
Apr7g0470 1143 Pfam Helicase conserved C-terminal domain 739 847 IPR001650 -
Apr7g0470 1143 MobiDBLite consensus disorder prediction 921 952 - -
Apr7g0470 1143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 536 714 IPR014001 -
Apr7g0470 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 887 IPR027417 -
Apr7g0470 1143 Gene3D - 715 889 IPR027417 -
Apr7g0470 1143 Coils Coil 1107 1130 - -
Apr7g0470 1143 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 170 960 - -
Apr7g0470 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 716 IPR027417 -
Apr7g0470 1143 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 505 533 IPR014014 GO:0003724
Apr7g0470 1143 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 886 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0470 Apr-Chr7 11029255 11034689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0470 492 867 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 2.04e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0470 K12811 - gmx:100784306 1675.99