Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0453 ATGGAGGGAGCATCGTGGAACAGTGTTAGCGTGGCACCGTTCCTTAGCAAAACCTACGACATGGTTGACGATCCTTCTACCGATTCCATCGTCTCGTGGGGTGATAACAACAATTCCTTCGTCGTTTGGAACGTTCCCCAATTCTCCACTCACATCTTACCCAACCATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGTTGAATACTTATGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGATTTTTAAGGGGTAAGAAACAACTTTTAAAAAGTATCAGTAGGCGGAAATCTGCTCATGTAAATGGTACTCAACAACCATCTCAAGTGCATAACTCACCTGTGAGGGCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGGAAGACTGAAAAGGGATAAGAATGTGCTTATGCAGGAACTTGTTAGGTTAAGACAGAAACAACAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGGCAATGGAGCAGCGCCAGCAGCAGATGATGTCATTCCTTGCAAAGGCAATGCATAGTCCAGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAGACAGATCACTGGGGGCAATAAAAAGAGGAGGCTCCATGGGCAAGAAGAAGATAGTTTAGCCACCAAGGAACTCCATAATGCTTTTGATGGACACGTTGTCAAGTACCAGACTTCCATAAATGAGGCTGCAAAAGCATTATTTCGCCAGATATTGCAAATAAACAATTCTAAGACAACAGAATCATCAATCAAGAACCCTGATGTTTTCCTTCTTGACGATGTTCCTTCTGCCATTGCATTAGATAGCAGTAGTTCATCGACACAGGTTTCTGATGTGATCCTTTCTGTGGTTCCACCTATTTCTGAGCTAACATGTATGGAAGTAGGATCACAATTTCCTGCCAATTGTATGCCCAGTAGCATATCTGAGGAGCAGTCTTCCCCTGCTATGTTGGCTGACTCTATCAAAACAACTGAATTTCCAGAATTAAGTTTGCATAATTGTCAAGAAAATGTTTCGGATCTTTGTAAAAGTCAAGAGATGGAGACAGAAAGCAGTTTACTGAATCATAATCTGAATGTTATGGGGGCTGAAATTAGGAACATGGAGGATATAGATATGATGTCAGCTGTTTTGGACGGGACAGACTCTATAGAAGCTGATCATTTTTCACCTGATGCAGGTGAAATTTCCAAACTCCCAGGAATCAATGATGAATTCTGGGAACTATTTTTAAGGCCAAGCCCAGTTACTGCAGACATGGAAGAAACCAAATGTAGCTCTCTAGGATGTGATTTGATAGAAGATCTGGGTTTTCCTTCAGACAAGGAAAATAAGCAGGAAAAAATTGATAAGATACAGCACGTTGAACGTCTTACTCAACAAATGGGACTTCTTGCATCAGAGTCCTAA 1476 0.4194 MEGASWNSVSVAPFLSKTYDMVDDPSTDSIVSWGDNNNSFVVWNVPQFSTHILPNHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKQLLKSISRRKSAHVNGTQQPSQVHNSPVRACVEVGKFGLEEEVGRLKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQAMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNRQITGGNKKRRLHGQEEDSLATKELHNAFDGHVVKYQTSINEAAKALFRQILQINNSKTTESSIKNPDVFLLDDVPSAIALDSSSSSTQVSDVILSVVPPISELTCMEVGSQFPANCMPSSISEEQSSPAMLADSIKTTEFPELSLHNCQENVSDLCKSQEMETESSLLNHNLNVMGAEIRNMEDIDMMSAVLDGTDSIEADHFSPDAGEISKLPGINDEFWELFLRPSPVTADMEETKCSSLGCDLIEDLGFPSDKENKQEKIDKIQHVERLTQQMGLLASES* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0453 491 Gene3D - 6 104 IPR036388 -
Apr7g0453 491 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Apr7g0453 491 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 5 451 - -
Apr7g0453 491 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 451 IPR027725 -
Apr7g0453 491 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr7g0453 491 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0453 Apr-Chr7 10798632 10802400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0453 10 491 HSF AT5G16820 50.000 6.57e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr7g0453 HSF_DNA-bind 6.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0453 K09419 - gmx:100793665 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0453 7 10798632 10802400 Apr7g0453 7 10798632 10802400 ECH
Apr7g0453 7 10798632 10802400 Apr8g2280 8 33212874 33214836 PCT