Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0445 ATGATGAGAACACCAAGCAGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGAGCCCAGAAGAGGATAAAATACTAGTCGATTACATTCAGAAACATGGCCATGGGAGTTGGAGAGCGCTTCCAAAGCTTGCAGGATTGAACAGGTGTGGGAAGAGTTGCAGATTAAGGTGGACTAATTATCTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGATGAAGAAGAGCAACTCATTATCAACTTACATGCAGTTCTTGGGAATAAGTGGGCGGCTATAGCATCTCATATGCCTGGTAGAACTGATAATGAAATTAAGAATTTTTGGAACACCCATTTAAAGAAAAAGCTTCTGCAAATGGGATTAGACCCAGTAACTCACCGTCCAAGAACAGATCACCTAAACCTTCTAAGCAATCTACAACAGATATTGGCTGCTGCAAACATTGTCAACAGTTTCACAAACCCATGTGACATAAATAATGCTCTAAGGCTACAATACACCACCATGCAAGATAGTTTCCTCAATGATGTTTTGGGATTGAATCACTCCAACCTCCAAAACCTGTTCAATGGCTCAGTTGGTTTTTCTTCTCAAATTCAACCAAATTTCCAAAACTTTGAAGCCACTCAGCAGCCACCACAAGGTGGTACGAATCAGCACTTGAATGGTGGCAAAAATAGTAGTTGTGGGGAATCTCAAAGGTTTGATGAACAACCTGGTTCCACAAACGCTAACCCCTCACCAACGAATTCGCTTCCACGTCTGGTTTCTGCTTCACCTGATCTTTCCCCAGCCAAGCAAGAAGAAAACATAGTTAACTCAAAGGACTTCTCAAACCCTTCTTCCACCACCTTTGAGTTAACGTGGGGCGATTTCATGAACGAGGAAGCAAGCGATGCCTATTGGAAAGGTTTCATAGACCAACATTCTAACCAGCCATGGTCGACAGTCCCATGA 957 0.4274 MMRTPSSDESGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHMPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRTDHLNLLSNLQQILAAANIVNSFTNPCDINNALRLQYTTMQDSFLNDVLGLNHSNLQNLFNGSVGFSSQIQPNFQNFEATQQPPQGGTNQHLNGGKNSSCGESQRFDEQPGSTNANPSPTNSLPRLVSASPDLSPAKQEENIVNSKDFSNPSSTTFELTWGDFMNEEASDAYWKGFIDQHSNQPWSTVP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0445 318 CDD SANT 69 112 IPR001005 -
Apr7g0445 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr7g0445 318 CDD SANT 16 61 IPR001005 -
Apr7g0445 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr7g0445 318 Gene3D - 13 66 - -
Apr7g0445 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 309 - -
Apr7g0445 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr7g0445 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr7g0445 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr7g0445 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr7g0445 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr7g0445 318 PANTHER MYB TRANSCRIPTION FACTOR 2 309 - -
Apr7g0445 318 MobiDBLite consensus disorder prediction 207 284 - -
Apr7g0445 318 Gene3D - 69 116 - -
Apr7g0445 318 SMART sant 13 63 IPR001005 -
Apr7g0445 318 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0445 Apr-Chr7 10579096 10580858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0445 1 307 MYB Transcription Factor Family AT5G16770 48.640 3.26e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr7g0445 Myb_DNA-binding 8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0445 K09422 - gmx:102660452 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0445 7 10579096 10580858 Apr7g0445 7 10579096 10580858 ECH