Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0394 ATGGAATCGGGGGTGAGATCAGGTGGTTCTGGGGTTGTGGTGAAGAGTAGGAACTCCTCAGGTTGTTTAATTGTTCGAAAGAAAGGGGATGGGTTGGGTGCTACGGCTTCCCCCTCTCGGAAGCTGTACGAATCTAAGAAAAGGGCCAAAGTCAACATGTCCTTGAGTGATTCTGGATCGAGCGATGAATTGCTGATGCCTACTGGTAGAAGGCTTGGCCCCGAGACCGTTCGAGTTTGTAATGGTTTAAGTGGCTTTGAGCGGGGTGCCACAAGTAGGGGCGGGAGTGAAATTAGAAGGAAGAGGGATAGACTGGAACGAATTAGGGGTAATGGGGAAAGTATAGCTGCGGATAATGGTTTGGACCAGAGGGAAAGGAAACGCAAGAAGTTGAATGTGTATGATTTTGAGGAATACGATGGAATGGGTGTGGATAAGATGAGGAGGAGGCATTTTGATAATGATGGAGTTGGTTATGGAGGAGGAAAGTTTGTGGGATCAATGCATGCTGCTAGAAGTGGCATTGATAGGGAGTTTGAAACAGGGTCGAGTGCACGTATGCTTGATAAAAGAAAGAACTCTTATTATGAGAGGCCAAGTGGGCTGTATCCAGAAGATAATGTTGATCACAGTAGGTTTAAGATGAACAGAGATGGAGCTCGGCTACCTCTATCCTTGCCAAGGGAGAAGTTTAATGCAGACGAGTCCATTAGGGTTCAGGGCAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCGTCAGAACACTATGATCATCACAAACCCGTGGAAAGCAGGCAAAGGTTGAAGATTGAAGGGACTACCAAGAGAAATGTTCTGATTCATCCTTCGCCATACTTGGAAACAAAGCCTGTCGAGAAACCAGGATTACTGGTTAAGTCAGAGAAGAAACAGATGGCATCAAGAAAATCATTGTCAAGCAAGGACAGTAAGGGCGATGAGGGGGATTCAGACAACAGTGACATGTCATTGAATCTGGTCATAAGAAATACTGAAGCTCGCAAGCCTACAAAGAAGAAGGTGTCTGAGGATGAGCAGACTCCTGTGCATGAAAAGCTGCCAAATACAAGAACGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAACGAATAAGGGAGATGCTGCTGAGTGCAGGTTGGACCATAGACTATCGTCCTCGAAGGAATAGAGACTATCTAGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTATGATGCACTACGAAAGCAATTGAATGATGATGCTAATGAGGCCAAGCCCAAGGGGGATAGTTCTTCTTTTTCTCCTATTGCGGATGAGGTTCTCAGTCAGCTGACAAGGAAAACTAGGAAGAAAATGGAGAAAGAAATGAAAAAGAAGAAGAAAATATATGATAGTGAAAGTGATAGTGGAAAAGAGACTCAAATAAGGAGACCTGCCAGCAACAAGCATGATATGAATAGCACAGACAGTGATAGCAACGAGGAGAAACTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGTTTGAAAATACCGTTTTCAGTGCTTGCTCTAAAAACCAGAATGCTACCCAACACTCAAGTGATGCAATAGAAAAATCGTTCTCTGGAAGTGAACCTCATGCTCATGGACGGAAGAGTAGAAAACATGGAAGATGTACTTTGTTGGTTCGTGGTGCCAACAAAGGATTAAATTCAGAATCTGATGGCTTTGTCCCATATACAGGCAAACGGACAATTCTTTCCTGGTTGATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGGAGGCGGAAAAAAGTACTGCTGGAGGGATGGATCACAAGAGATGGAATTCATTGTGGCTGCTGTAGTAAGATTCTTACAGTTGCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCGCAGCCATATCAAAATATATATTTGGAATCTGGAATTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATTAAGATGCTTCCTCTTGGTGAATGGAATTGTCCAAATTGCACCTGTAAAATTTGTGGCACAGCTAGTGGATCTTTTACAAAAGAAGATGCAACTGTGTATGTCCTACGTACTTGCAACTTATGTGAGAAAAAATACCATGACTCTTGCACCAAGGAGATGGATACCCTTCCTAATAACTTCAATATGCCAGGCCTTTCTTTTTGTGGTAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAATTAGAAGCAGGTTTTACGTGGTCTATTATTCATAGAACAGATGAAGACTCTGAGGCAGCTAGTAGGGGAACTTCCCAGAGGGTAGAATGCAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCAGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGATCTAACTTTAGTCGGTTAAGTTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGAGATGAAATCATTTCTGCAGCATCAATCAGGTTCCATGGAACTAAGATAGCAGAGATGCCATTCATCGGAACTCGCCATATATATAGGCGTCAAGGGATGTGCCGCAGGCTTTTTTCTGTCATTGAATCGGTGCTTTGCTCTCTGAAGGTTGAGAAACTGGTTATTCCTGCAATTGCTGAACTCATCCATACGTGGACAACAGTTTTTGGCTTCACACATGTTGACAAATCACTCAGGCAAGAAATGACGTCATTGAATATGATGGCCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTAGAACAAGGAAAACATGAGGGTACAACTGCAGGTTCTGAGAAAATGGGAAGTGGAGACACTGGTTTTATCAAGACCAAAAAGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACTAGATTCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCTAATGAGATGAATGATGAACACAGTGATGCTTCTCAAGAACTAAATGATCAAGTTTTGGTTGATGGGACTGTGTATTCCAAATATCATTCTGAGGAAATGTCTGATTCAGCTTCAGATAAATATGTTTCTCCTTCCAGTACTAGTCATGATGCACTAGAAATGAAAAATAAAATAGTGATAGCTCCTCCTATTGATAAATTAAATCAATCTTCCAAATGTCAATCCATTTCTCTGAATGACACTTCTGTGAGTAGTCACCCATTAGATGTTCCAAAATTTCAAGATTTGGCTCAGGAAACTGCAAGTTCTGATCCATGTTCTCCAGAAAACCTTGACAAGAAATGTCACTCATTCACTACTATGAATTATAATTCATTGGAGCTTGACATTAATCCAGTTTTGGATTCCCAAATTGCAGACATTACTCCACCTTCTAAAGAAGTTTGTATGAATGATGCTCTCGAGGTTCTTAAAGCTGTTCCTTCGGGGAATATATCTGAAGAGAATATTACCAAGGAGAATAATCAAAATGTAGATGTCTCTGGTTCTGCTCTCAATCATGCTGACGACAGTTTGTTGCAAGTAAGATCTGATTCCAATGGTGAAATTGGATGTGAGAATGAGAAGGATTTACATTTGAACTCAGGAGTGGCTTCGAATGAAATGGATTTTGATGAAAGTGGGCTAAATGCTTCTGGTGATAGTTCCGAAACTGTTCCAGTCTAA 3915 0.4133 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASPSRKLYESKKRAKVNMSLSDSGSSDELLMPTGRRLGPETVRVCNGLSGFERGATSRGGSEIRRKRDRLERIRGNGESIAADNGLDQRERKRKKLNVYDFEEYDGMGVDKMRRRHFDNDGVGYGGGKFVGSMHAARSGIDREFETGSSARMLDKRKNSYYERPSGLYPEDNVDHSRFKMNRDGARLPLSLPREKFNADESIRVQGKNGVLKVMVNKKKVGGPSEHYDHHKPVESRQRLKIEGTTKRNVLIHPSPYLETKPVEKPGLLVKSEKKQMASRKSLSSKDSKGDEGDSDNSDMSLNLVIRNTEARKPTKKKVSEDEQTPVHEKLPNTRTKEGKIKRGSGTEKQKLRERIREMLLSAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALRKQLNDDANEAKPKGDSSSFSPIADEVLSQLTRKTRKKMEKEMKKKKKIYDSESDSGKETQIRRPASNKHDMNSTDSDSNEEKLSSFIKQGSKSMKNKMFENTVFSACSKNQNATQHSSDAIEKSFSGSEPHAHGRKSRKHGRCTLLVRGANKGLNSESDGFVPYTGKRTILSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVAKFELHAGSKLPQPYQNIYLESGISLLQCQIDAWNRQEHSEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIKMLPLGEWNCPNCTCKICGTASGSFTKEDATVYVLRTCNLCEKKYHDSCTKEMDTLPNNFNMPGLSFCGKECKELFEHLKKYLGTKHELEAGFTWSIIHRTDEDSEAASRGTSQRVECNSKLAIALTVMDECFLPVVDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIISAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSVIESVLCSLKVEKLVIPAIAELIHTWTTVFGFTHVDKSLRQEMTSLNMMAFPGIDMLQKLLVEQGKHEGTTAGSEKMGSGDTGFIKTKKGNRSDMGSSTPLDSHGSDDASSNPANEMNDEHSDASQELNDQVLVDGTVYSKYHSEEMSDSASDKYVSPSSTSHDALEMKNKIVIAPPIDKLNQSSKCQSISLNDTSVSSHPLDVPKFQDLAQETASSDPCSPENLDKKCHSFTTMNYNSLELDINPVLDSQIADITPPSKEVCMNDALEVLKAVPSGNISEENITKENNQNVDVSGSALNHADDSLLQVRSDSNGEIGCENEKDLHLNSGVASNEMDFDESGLNASGDSSETVPV* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0394 1304 MobiDBLite consensus disorder prediction 546 574 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 300 330 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 45 69 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 1016 1078 - -
Apr7g0394 1304 SMART PHD_3 710 751 IPR001965 -
Apr7g0394 1304 Pfam PHD-finger 711 753 IPR019787 -
Apr7g0394 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 800 IPR013083 -
Apr7g0394 1304 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1248 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 255 385 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 1288 1304 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 478 512 - -
Apr7g0394 1304 ProSiteProfiles Zinc finger PHD-type profile. 708 753 IPR019787 -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 442 520 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 344 385 - -
Apr7g0394 1304 ProSitePatterns Zinc finger PHD-type signature. 711 750 IPR019786 -
Apr7g0394 1304 SUPERFAMILY FYVE/PHD zinc finger 700 756 IPR011011 -
Apr7g0394 1304 PANTHER PHD FINGER FAMILY PROTEIN 1 1248 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 1040 1068 - -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 1277 1304 - -
Apr7g0394 1304 Pfam Tify domain binding domain 633 683 IPR032308 -
Apr7g0394 1304 MobiDBLite consensus disorder prediction 255 280 - -
Apr7g0394 1304 CDD PHD2_CHD_II 711 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0394 Apr-Chr7 10091764 10099807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0394 4 1011 PHD Transcription Factor Family AT4G14920 50.536 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr7g0394 TDBD 8.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0394 - - gmx:100801863 1969.13