Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0380 ATGGAGCTCCAGAGGCGACCAGATCAGTGTCTTCCGGAGAGGAAAGGGCAGAAGAGGAAGCTGGAAGAGGAATTCGAAGATGACCGGCAGATCTCCGCGCCTCCCACCGGCGACGCTCGCTACGCTCTCCTCTCCGACGTTAAGGAACAAGTTTCCATCCTTGATTCTACTTTCTCCTGGAAGGAATCCGATCGTGCTGCCGCGAAGCGCGCCACTCACGCCCTCGCCGATCTCGCCAAAAATGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGCGCCATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTTCGGCTGAAAACGACCACGTCCAGAGGCCATTGCCGTTTGAGCACGAGGTTGAGAAGGGGAGTGCTTTCGCGCTTGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGCCTAACATCACGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCGATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGGACCCTTGCATTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCATTGCAACCTGTTATTGGATTGCTTAGCTCTTGTTGCTCTGAGAGCCAAAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCTGCTGATGTTCAGCTCAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCTCAGGACATACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATACCATTACTTAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGAGGAATTCAGAGACTGCAGGATGGGGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAAACATTGAAAAGATTGGAAGAGAAGATTCATGGCCGCGTCCTGAACCATTTGTTATATCTGATGCGTGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGAAAGATATTTATTGATCACCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTCGAACCCTAAGCAGCAACTTGATGGAGCTGTGGGTTTATGCAAGTTGGCCAATAAAGCTATGACTTTGTCTCCTGTAGATGCTGCACCCCCATCTCCAACACCCCAGGTTTATTTGGGAGAACAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTGGAAGGTAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCGTCTTCAGATGCATTTCGGGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGATGTCACCCTTGTTATTGCTCAAGATCTCCTCCGAGCAGCTGACCAATATCTTCTAGAAGGACTTAAGAGACTCTGTGAATACACAATTGCACAGGATATATCACTTGAAAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTTAATGCTATATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCGTATAATACCAGAAATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAATTCCCACATCCAGCTGTAG 2121 0.4479 MELQRRPDQCLPERKGQKRKLEEEFEDDRQISAPPTGDARYALLSDVKEQVSILDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPSAENDHVQRPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSADVQLKEMSAFALGRLAQDIHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHHGLELLMGLLGSSNPKQQLDGAVGLCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLVIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHFDKLSARPGHSHLIQRIIPEIRNYFVKALTKANSHIQL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0380 706 Gene3D - 47 167 IPR011989 -
Apr7g0380 706 SMART arm_5 468 508 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 81 135 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 312 352 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 186 226 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 353 393 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 228 268 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 136 184 IPR000225 GO:0005515
Apr7g0380 706 SMART arm_5 270 310 IPR000225 GO:0005515
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Apr7g0380 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Apr7g0380 706 SUPERFAMILY ARM repeat 438 611 IPR016024 -
Apr7g0380 706 MobiDBLite consensus disorder prediction 1 37 - -
Apr7g0380 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Apr7g0380 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 - -
Apr7g0380 706 MobiDBLite consensus disorder prediction 1 33 - -
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Apr7g0380 706 Gene3D - 272 513 IPR011989 -
Apr7g0380 706 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Apr7g0380 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Apr7g0380 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Apr7g0380 706 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Apr7g0380 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Apr7g0380 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Apr7g0380 706 Gene3D - 168 271 IPR011989 -
Apr7g0380 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 IPR044282 -
Apr7g0380 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Apr7g0380 706 SUPERFAMILY ARM repeat 62 411 IPR016024 -
Apr7g0380 706 SMART BTB_4 540 637 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0380 Apr-Chr7 9862575 9870478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0380 199 405 U-box Gene Family AT3G46510 30.000 2.32e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr7g0380 BTB 3.1e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0380 - - gmx:100812456 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0380 7 9862575 9870478 Apr8g2337 8 33772866 33781403 PCT