Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0373 ATGGAGCAAGCGGTGTCACTGATTGGTGCCCTCAACCTTGTGTCCCGCAACCTCCCTCTTCCCCCTGACCTCTTCCACACCGTTTCTTCTATCTATCGCCGATCTCACTCTCTCAACTCCTCCTCCGATGCATCCAATTCTGCATCTGAAGAAGATTTATTGACGGACCTTCAAGATGCGCTGTTGGACCGGCGTCCTAGCTTCTCGTCTGGTTTCAAATTGAACAAAACAATGGAAAGCCGTTATCAGAGTCAGATTCAGCACCGCTTAATCGAACTCGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTACAGACGAGGTGCTTGCTTGAGCTTTATGGACTAAAGCTAGCGGAGTTGCAGAGGAAGGTTCGGACTGATGTGAGTTCTGAATACTGGCTTAGTGTTAAATGTGCATATCCTGACAGGCAATTGTTTGATTGGAGCATGATGCGGTTGCGTCGTCCACTATATGGTGTTGGAGATCCATTTGTCATGGACGCTGATGATCAAATAAGAAAGAAACGGGATGCGGAGAGACTATCGAGATTAGAAGAGCAGGCAAAAAATCATATAGAGACTAGAAAACGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCGATGAAGCGAAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGAGCTGAGAAATTGAGATTCCAAGCCTTAAAGGCCGATGATCAAGAAGCTTACATGAGAATGGTCAAAGAGAGTAAGAATGAAAGGTTGACTTTGCTTCTTGAAGAAACGAATAAACTACTTGTAAATTTGGGAGCAGCAGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAACTGATTTACCTGAGTCAGATGGATTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGGCAACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCATCTGTTCTTCAAGGTGGAGAATTAAGACCGTACCAGCTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATTTCATTGGTAGCATACCTTATGGAATACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTTCCAAATTGGATCAATGAATTCTCAACATGGGCTCCTAGCATCACAGCTATTCTTTATGATGGACGGCTGGAAGAGCGAAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTAGACTCTGGCTATCACATTCAACGAAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTATGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCTTTTGCGGATCGAGTTGATGTCTCCCTAACTGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATTTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAGAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGTTTGCTTCCCAAACTTCGTAGAGCTGGTCACAGGGTCCTTCTTTTTTCACAAATGACTCGTCTTATGGACATTCTCGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGATGGCTCAACAAAGACCGAGGAAAGAGGCTCCCTACTACGGAAATTCAATGCACCTGATTCTCCATACTTCATGTTTCTCTTGAGCACCCGTGCAGGAGGTCTTGGTTTGAACTTACAGACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAGATGGATCAACAAGCTGAGGATCGAGCCCATCGAATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTCTTAGTTAGTGTGGGATCAATCGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGGCTTTTTAACACTACTTCAACAGCACAAGACAGAAGAGAAATGTTGGAGGAGATCATGCGTAGAGGTACTAGCTCACTTGGTACAGATGTGCCAAGTGAGAGAGAAATTAACCGTCTTGCAGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAGAATTACAGGTCTCGGCTCATGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCTCTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGCTTAGTGATCTACAATGGATGAAGGCTGTGGAAAACGGGCAGGATGTATCTAGGTTTTCAGTAAAAGGGAAAAGAAGAGACCACCTCCCTGTTGACAACCACGCACAAGCTAGTGGTGACATGAGGACTGAAGAAAGGTTCTTAGAGTTGAGGAATGCGAGTGTCTGCATGGAAAATGAGAGATCAAGTGAAGATACATTCAATGTGACTCCTGCCTCTAAGAGACTCAAGTCTGAAGAAATAAATTCCCAGAAGCATGAAAACGAGGACGTCAGAGTAAGTGGTATGGACGAGCATATAGTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATGTTGGCCAGGGTTCATTCTCTGATAGTAGAGAGCAGAATGCAAATGGAAGAGAAAACTGGAACTGA 3240 0.4256 MEQAVSLIGALNLVSRNLPLPPDLFHTVSSIYRRSHSLNSSSDASNSASEEDLLTDLQDALLDRRPSFSSGFKLNKTMESRYQSQIQHRLIELEGLPSSRGEDLQTRCLLELYGLKLAELQRKVRTDVSSEYWLSVKCAYPDRQLFDWSMMRLRRPLYGVGDPFVMDADDQIRKKRDAERLSRLEEQAKNHIETRKRRFFAEILNTVREFQLQIQASMKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSETDLPESDGLKNGISKESPLEEDVDLIDSDHNGNTSDLLEGQRQYNSAIHSIQEKVTEQPSVLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAYLMEYKGVTGPHLIVAPKAVLPNWINEFSTWAPSITAILYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWHYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSRSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKAFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGQDVSRFSVKGKRRDHLPVDNHAQASGDMRTEERFLELRNASVCMENERSSEDTFNVTPASKRLKSEEINSQKHENEDVRVSGMDEHIVSWNTHRKKRSSYVGQGSFSDSREQNANGRENWN* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0373 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 855 IPR001650 -
Apr7g0373 1079 Pfam Snf2-ATP coupling, chromatin remodelling complex 892 952 IPR029295 GO:0042393
Apr7g0373 1079 Gene3D - 343 598 IPR038718 -
Apr7g0373 1079 PANTHER SNF2/RAD54 HELICASE FAMILY 2 1035 - -
Apr7g0373 1079 Coils Coil 174 194 - -
Apr7g0373 1079 Pfam Helicase conserved C-terminal domain 685 798 IPR001650 -
Apr7g0373 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 386 552 IPR014001 -
Apr7g0373 1079 PANTHER ATP-DEPENDENT HELICASE BRM 2 1035 - -
Apr7g0373 1079 MobiDBLite consensus disorder prediction 1052 1079 - -
Apr7g0373 1079 SMART SnAC_2 891 952 IPR029295 GO:0042393
Apr7g0373 1079 SMART helicmild6 714 798 IPR001650 -
Apr7g0373 1079 Pfam SNF2-related domain 377 665 IPR000330 GO:0005524|GO:0140658
Apr7g0373 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Apr7g0373 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 852 IPR027417 -
Apr7g0373 1079 MobiDBLite consensus disorder prediction 291 344 - -
Apr7g0373 1079 MobiDBLite consensus disorder prediction 321 336 - -
Apr7g0373 1079 SMART ultradead3 370 563 IPR014001 -
Apr7g0373 1079 Gene3D - 605 905 IPR027417 -
Apr7g0373 1079 Coils Coil 889 909 - -
Apr7g0373 1079 MobiDBLite consensus disorder prediction 1048 1079 - -
Apr7g0373 1079 CDD SF2_C_SNF 676 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0373 Apr-Chr7 9655734 9665000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0373 671 826 RAD5 or RAD16-like Gene Family AT5G43530 36.709 1.36e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr7g0373 SNF2_N 3.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0373 - - gmx:100775993 1919.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0373 7 9655734 9665000 Apr7g0373 7 9655734 9665000 ECH