Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0342 ATGATAAAGAGAAAGTCTAGCTCAGGTCGCCAAAAGATTCCAATCGAGAAAATACCAAAAAAGAGTCATCTACAGGTTACATTCTCAAAACGTCGTTCAGGACTTTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGAGTAGAAATTGCAATCATTGTTTTCTCTCCCGCCGATAAGGCCTTTTCGTTTGGCCATCCAGAAGTTGAGTCCATAATAGATTGCTATTTAACTCGAAACTCTCCATTAGACCAAAGTACTAACCAACTTGTTGAGGCTCATCGTAATCTCAACATGCAACTTACCCAAATCCTTAATCAGTTGGATATTGAAAAACGAGGAGAAGAGCTAGATCGAGCGCAGAAAGTTAGGCAGAGACAATTCTGGTGGGAGAACCTCATTGATGAACTTGGATTGCATGAGTTACAACATTTAATGTTTTCAATGGAGGAGCTAAAGAAGAATGTTGCACAATATGCTACCAAAATGTTGATGGAGCATACCACTATTACTGGGCCTGGGCTGAATGGTTTTGGGCTTTGTGATGCCTTCACCAACAAATCCCTTGAAATTTATGCTAATGCTAGTTCATCTACTATTGCTAATGCCGCTAATCTGAGTTTCCGAAACTGA 633 0.4013 MIKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDCYLTRNSPLDQSTNQLVEAHRNLNMQLTQILNQLDIEKRGEELDRAQKVRQRQFWWENLIDELGLHELQHLMFSMEELKKNVAQYATKMLMEHTTITGPGLNGFGLCDAFTNKSLEIYANASSSTIANAANLSFRN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0342 210 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Apr7g0342 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 198 - -
Apr7g0342 210 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Apr7g0342 210 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Apr7g0342 210 PANTHER MADS BOX PROTEIN 7 198 - -
Apr7g0342 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Apr7g0342 210 Gene3D - 89 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0342 Apr-Chr7 9165454 9166088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0342 7 157 Type I MADS-box Gene Family AT2G24840 53.797 1.95e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr7g0342 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0342 - - qsu:112040126 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0342 7 9165454 9166088 Apr8g2386 8 34156317 34156844 PCT