Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0293 ATGAGTGATACAAAAGAAAACGAGGAAGCTGGCCAGGGCGTGCCCTCGGTTGTGGAAGAAAACCAGAAATTGGTTGATGCACAGGTTCAAGTTCAACCTGAAGCTGTTTCTGCTACTGTTTTAGTAGAAGAAACTTCAAATCATGTTGAAAATGAGTCAAATAATGTTGAAAATGTGAAGGCAGAGCCACCTGCTGAGGATAAAATTTTGGAACCTGCGGCTGTTTCCAAAGGAATTCCACAAGATCTTCAAACCACTCTTCACTCTGTCCCAGTAGAGGCTGATACTCAGATTTTGAACAAAACTGAGCGGAAAGAAGCTTCTGATGCAAAGGTGGAAGCTGAAGAAATTCCCCAGAGTAATAAGGATGTTGAGAATGATGATAACGTTCATCAAAATAATGTTGGTGATGCTGGAACAGCTATGGAGGTGAAGCCTGAAGCTTGTGCAGTGGCTGATAGTAAAACTTGTAATAATGGTGAACCCACGGCCATGACTACAAGTCACAGTGAGCCTGCTGTGCCACAACCTGCTATTGCCGATGCAAAAGCTGAAATCAAGGATGTATTGGAAGTTGAGAATAAGCCTGATGAAAAGCAAGCTGCTGAACCTGCAGATAATGGGAATTCAAATTCAAAGCACATGTTTTTCTTGGATGCTGACCATTCTTATGATGGTAATGAGTCAGGAACAGAGGAAGAGCAGTCAGCATTTATGAAAGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGGCTTAATTGCCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTGACCTCTTGTAAATTATGGCGACAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACTGTTTCATGGACTTTTAGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAATAAAAGGAGGTGAGCTGAATGTGCCTATTGCTTCTCATCCAGAGCCTATGAATATTGAAAATCAGGCTTCGGCGTCAGGTAGAGCCCGAAGAGATGCAGCAGCACGGGCTATGCAGGGTTGGCACTCACAGCGTCTCCTGGGCAACGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTACAAAAGCGTGAAAAGCAGCTTAAAAGTATCAATTTACTGAAACGCAAGAAGCCATCTTACATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCATCTAAACCACAATTGGACTCAGCTGTAATTGATATTGGGCCTCCTGCTGATTGGGTAAAAATCAATAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTACAATCAGACCCAGCAGGACGCTTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCATGGGGCGTGACACCTTTCAAGAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCTGACATCTGCAGTGGTGACGCTGCATGGGCAGTTGTTCGTTCGTGTCCCGTTTGAACAATCAGAATAG 1569 0.4366 MSDTKENEEAGQGVPSVVEENQKLVDAQVQVQPEAVSATVLVEETSNHVENESNNVENVKAEPPAEDKILEPAAVSKGIPQDLQTTLHSVPVEADTQILNKTERKEASDAKVEAEEIPQSNKDVENDDNVHQNNVGDAGTAMEVKPEACAVADSKTCNNGEPTAMTTSHSEPAVPQPAIADAKAEIKDVLEVENKPDEKQAAEPADNGNSNSKHMFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPMNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDSAVIDIGPPADWVKINKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHLTSAVVTLHGQLFVRVPFEQSE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0293 522 MobiDBLite consensus disorder prediction 87 139 - -
Apr7g0293 522 CDD ARID 234 319 - -
Apr7g0293 522 Pfam ARID/BRIGHT DNA binding domain 235 319 IPR001606 GO:0003677
Apr7g0293 522 MobiDBLite consensus disorder prediction 98 130 - -
Apr7g0293 522 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 22 521 IPR045147 GO:0006357
Apr7g0293 522 SMART ARID_2 229 319 - -
Apr7g0293 522 MobiDBLite consensus disorder prediction 44 63 - -
Apr7g0293 522 MobiDBLite consensus disorder prediction 44 58 - -
Apr7g0293 522 ProSiteProfiles ARID domain profile. 232 323 IPR001606 GO:0003677
Apr7g0293 522 CDD ACD_sHsps-like 438 517 - -
Apr7g0293 522 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 426 522 IPR002068 -
Apr7g0293 522 Gene3D - 422 522 IPR008978 -
Apr7g0293 522 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 22 521 - -
Apr7g0293 522 MobiDBLite consensus disorder prediction 194 214 - -
Apr7g0293 522 SMART bright_3 233 324 IPR001606 GO:0003677
Apr7g0293 522 Pfam Hsp20/alpha crystallin family 439 521 IPR002068 -
Apr7g0293 522 Coils Coil 42 62 - -
Apr7g0293 522 SUPERFAMILY HSP20-like chaperones 428 518 IPR008978 -
Apr7g0293 522 Gene3D - 232 329 IPR036431 GO:0003677
Apr7g0293 522 SUPERFAMILY ARID-like 227 335 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0293 Apr-Chr7 8273530 8280245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0293 216 520 ARID Transcription Factor Family AT1G76510 62.739 2.05e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr7g0293 HSP20 0.00018 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0293 - - gmx:100791081 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0293 7 8273530 8280245 Apr7g0293 7 8273530 8280245 ECH