Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0279 ATGTCTAAGATATTGGTGTCAAGGGTCACTATTGCCCATCATACAAATAAAAAAAAAAAAATGACAAGAAGAATATACCAGGCAACTAATCCAACCATGATTGAAGTTTGGTTCTTGGCTTTACTGGTTCTCTCCAATGGGTTATCTTCAACTGGGGCTGGCAAGAATAATTCCACAAGACCTGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAACACAACTGTTGGTAGAAATATAAAACTGGCTATAGAAGCTGCTATTGAAGATGTAAATTCTGATCCAAATATTCTTGGTAAAACCAAGTTGAACCTCTCACTGCAAGAAGATTCTAAATATAGAGGTTTTCTGAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACACACAGTGGCAATAATTGGTCCCCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTTTGCTGTCATTTTCGGCCTTGGATCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTTGCCATAGTGATCTCTATCAAATGGCTGCAATAGCAGACCTTGTTGACCACTATGGTTGGAAAGATGTCATTGCTGTCTATATTGATGATGACAATGGGAGAAATGGAATTGGGGCATTAGGCGATAAGCTTGCTGAGAAGCGTTGCAAGATATCTTATAAAGCACCTTTAAGCCCTGAAGCAACTAGGGAGGAAATCACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCCAATACTGTTTGGGGCCCTAAGGTGTTTAATGTTGCAAAGTATCTTGGAATGATGGGAACTGGGTATGTCTGGATAGCCACTGCTTTTCTGTCTGCTTTGATTGATATCTATAATCCTGTCCCTTTAGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTGTGTACACACCAGATTCAGAGCTCAAAAGGAGGTTTGTTTCTAGGTGGAAAAACTTGACTAGTGGAAATAATGCTAATGTCCCTTTTGGATTGAGTTTTTTAGCTCTCTATGCATATGACACTGTTTATGCACTTGCTCATGCACTTGATGCATTTTTCAAACAAGGGAACCAAATTACATTCTCAGATGATTCAAGGCTATCTTTAATAAGTGGAGACAACTTGCATCTTGATGCTTTGAAAATCTTTAATGAAGGAAATCTGTTACGTAGAAACATTTATGCGATTAACATGACTGGTGTATCAGGTCCATTCAAGTACACATATGATAGAAACCTTGTTAATCCTGCATATGAGATCATTAATGTGGTAGGAACAGGAATTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTAATTCCACCAGAAACTCTCTTTTCCAAACCAGCCAATATTTCCAGGGCAAATCAAAAGCTGTTACCTGTGATTTGGCCAGGAGAGACAGACCAGAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAAAGGTGTTACTTACCATGAATTTGTCTCACAAGTAAAAGGCACTGATATGTTTGAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACCTGTTGCCTTATGCTGTCCCCTATAAGTTCATCCCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTCTTATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTCACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAGGGAGTCAAAATCCAATGCTTTGGCCTTTTTGGCCCCATTTACGCCAAAGATGTGGTGTGTCACGGCTGTCTTTTTCATATTAGTGGGGGCTGTAGTTTGGATTTTGGAGCATAGGGTGAATGATGATTTTAGGGGACCACCAAAAAAACAAGTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGTTTTGTGCTGATTATATGGTTATTTGTAGTTCTTATAATCAACTCAAGTTACACTGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTCTTCGCCTATTAAAGGCATTGAAAGCTTAGTAAACGGCAAAGACCTTATTGGGTACACGCAGGGCTCTTTTGCTAAAAACTATTTAGTTCAGGAAATTGGTATTGAGGAGTCCAGGCTTGTTCCTCTAAAAACACCAGCAGAAGCTGCTAATGCATTGAAAAAGGGTTCCCAAAATGGGGGTGTTGCTGCTTACATTGATGAGCGTGCCTACATTGACATCTTCCTTTCAACCCGTTGTGATTTAACTGTTGTAGGTTCAGAGTTCACCAGAAATGGCTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCAATTGACCTATCAACTGCCATTTTGCAAATGACAGATAATGGAGACCTTCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGTTCTAAGCTTGAAGTGGAAAGACTCCAGCTTAAAAGCTTCTGGGGCCTTTATGTAATATGTGGGTCTGCCTGTTTGCTTGCACTTTTCATATATCTTTTACAGATTTTGAGGCAATACCAGAAGCACTATTCACAGGAAGTCGACTCCACTGAACAAAGCTTAAGATCAGGATCTTCACAACTAAGGACTTTCCTTTCATTTGTTGATGAAAAAGAAGAGACTGTTAAGAGCAGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAAGTAGTAAGGGAGGCTCGCCCATCAACTCCAACAAAGGATATGCTTCATACAGAAGTGAATGTGCTACTGAACTCTGA 2907 0.4028 MSKILVSRVTIAHHTNKKKKMTRRIYQATNPTMIEVWFLALLVLSNGLSSTGAGKNNSTRPDFVNIGALFSFNTTVGRNIKLAIEAAIEDVNSDPNILGKTKLNLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDHYGWKDVIAVYIDDDNGRNGIGALGDKLAEKRCKISYKAPLSPEATREEITNVLVQVALAESRVIVVHANTVWGPKVFNVAKYLGMMGTGYVWIATAFLSALIDIYNPVPLDSMDEIQGVLTPRVYTPDSELKRRFVSRWKNLTSGNNANVPFGLSFLALYAYDTVYALAHALDAFFKQGNQITFSDDSRLSLISGDNLHLDALKIFNEGNLLRRNIYAINMTGVSGPFKYTYDRNLVNPAYEIINVVGTGIRRIGYWSNYSGLSVIPPETLFSKPANISRANQKLLPVIWPGETDQKPRGWVFPNNGRLLKIGVPKGVTYHEFVSQVKGTDMFEGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSITELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRESKSNALAFLAPFTPKMWCVTAVFFILVGAVVWILEHRVNDDFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNGKDLIGYTQGSFAKNYLVQEIGIEESRLVPLKTPAEAANALKKGSQNGGVAAYIDERAYIDIFLSTRCDLTVVGSEFTRNGWGFAFPRDSPLAIDLSTAILQMTDNGDLQRIHDKWLLSSACLSQGSKLEVERLQLKSFWGLYVICGSACLLALFIYLLQILRQYQKHYSQEVDSTEQSLRSGSSQLRTFLSFVDEKEETVKSRSKRRKMERISYRSSKGGSPINSNKGYASYRSECATEL* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0279 968 Gene3D - 180 457 - -
Apr7g0279 968 SUPERFAMILY Periplasmic binding protein-like I 59 496 IPR028082 -
Apr7g0279 968 Gene3D - 787 851 - -
Apr7g0279 968 PIRSF IGluLR_plant 31 966 IPR017103 -
Apr7g0279 968 Gene3D - 82 432 - -
Apr7g0279 968 CDD PBP1_GABAb_receptor_plant 65 461 IPR044440 -
Apr7g0279 968 Pfam Receptor family ligand binding region 81 442 IPR001828 -
Apr7g0279 968 MobiDBLite consensus disorder prediction 927 968 - -
Apr7g0279 968 CDD GluR_Plant 504 844 - -
Apr7g0279 968 MobiDBLite consensus disorder prediction 945 960 - -
Apr7g0279 968 Pfam Ligand-gated ion channel 845 876 IPR001320 GO:0015276|GO:0016020
Apr7g0279 968 Pfam Bacterial extracellular solute-binding proteins, family 3 552 844 IPR001638 -
Apr7g0279 968 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 952 - -
Apr7g0279 968 PANTHER GLUTAMATE RECEPTOR 3.6 44 952 - -
Apr7g0279 968 SMART GluR_14 505 846 IPR001320 GO:0015276|GO:0016020
Apr7g0279 968 Gene3D - 615 745 - -
Apr7g0279 968 Gene3D - 511 614 - -
Apr7g0279 968 SUPERFAMILY Periplasmic binding protein-like II 479 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0279 Apr-Chr7 8121660 8126834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0279 37 945 Ion Channels AT3G51480 58.352 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0279 K05387 - gmx:100793320 1583.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0279 7 8121660 8126834 Apr3g0426 3 8411584 8416771 PCT