Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0254 ATGGGTTCGGTTCCTGCGGAACTAAGCTTAGATTTTGTTCCCAAAACAATCACTGATTTTCTCTGCTACATTTCCACCACAAATAACGCCACCCTCAAGTTGTTCTTGCTTGATGACTTCATCAGCAAGTTGGAACTTGAATTGTCCAAGATCCAAGCATTCAAACGCGAACTTCCCCTCTGCATCTTCCTCTTAAATGATGCAATTTCAGCTCTGAAGGTGGAATCAGCAAAATGCAGGGTGCTTAAATCTGAACCAGTGTTGGAGGAGTTTATTCCCTTGAAGAGAGAGTGTGATCAGAGGGAGGAAAGTGAAAAGGAGAAGGAATGCAAGGATAACAAGAAGAATTGGATGAGTTCTGTGCAGCTTTGGAACACTGATAATAATTACAAAAAAAATGCATGTGACTGTGACAAAAAACCAAACTTTAAACAAGAAAACAAGGAGAATTATGAAGAAGAAAGACAAAGTGTTGCTGAGGGCTTGTTCCAATATGGTAGAAATAGAAATGGAGGGAGGGGGTTTATGATGCCTTTTTCCACAACAAAGGGAGAGAAGGAAGATTGTGTGGCGAAGGGACTCTCTCTTCAGACCCCTGGAACTGTAATGAAGAACTCAAGGGAAGGTTATGGTTCCAGAACCAGCTCTAGCAGGGTGGTTTCCTCCTCTCCTTTGGCTCCGCCTCAGCCGCAATCTGCCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCTTCGATTTGTTAAGGCTTTAGAGGAGCTTGGAGGTTCTCAAGTGGCTACTCCAAGGCAAATTAGGGAATTCATGAGGGTCGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATACCGACTTCATACACGCAGAGTTCCACTTGCTACGGCTACAACTGCTAATCGGTCTGTTGCGGTTCTTGGAGGCTTGTGGATGCACAATGAATCCTCAAAGGGTAGCAGTTCTGATTCTCCTCAAGGCCCCCTCCAATTAGCTACACGATCCGGGGAAGGGACATCGCCTACAGAGGGTGACAACATGATAGATGATGATGTAAAATCCGAGTTATAG 1077 0.4485 MGSVPAELSLDFVPKTITDFLCYISTTNNATLKLFLLDDFISKLELELSKIQAFKRELPLCIFLLNDAISALKVESAKCRVLKSEPVLEEFIPLKRECDQREESEKEKECKDNKKNWMSSVQLWNTDNNYKKNACDCDKKPNFKQENKENYEEERQSVAEGLFQYGRNRNGGRGFMMPFSTTKGEKEDCVAKGLSLQTPGTVMKNSREGYGSRTSSSRVVSSSPLAPPQPQSARKQRRCWSPELHLRFVKALEELGGSQVATPRQIREFMRVDGLTNDEVKSHLQKYRLHTRRVPLATATTANRSVAVLGGLWMHNESSKGSSSDSPQGPLQLATRSGEGTSPTEGDNMIDDDVKSEL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0254 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 357 IPR044787 GO:0003700|GO:0006355
Apr7g0254 358 MobiDBLite consensus disorder prediction 198 238 - -
Apr7g0254 358 Pfam Myb-like DNA-binding domain 237 288 IPR001005 -
Apr7g0254 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 292 IPR017930 -
Apr7g0254 358 SUPERFAMILY Homeodomain-like 233 293 IPR009057 -
Apr7g0254 358 MobiDBLite consensus disorder prediction 316 344 - -
Apr7g0254 358 MobiDBLite consensus disorder prediction 316 358 - -
Apr7g0254 358 Gene3D - 234 292 - -
Apr7g0254 358 MobiDBLite consensus disorder prediction 198 236 - -
Apr7g0254 358 PANTHER TRANSCRIPTION FACTOR HHO6 6 357 - -
Apr7g0254 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 290 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0254 Apr-Chr7 7843806 7846571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0254 6 314 G2-like Transcription Factor Family AT2G03500 36.778 9.98e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr7g0254 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0254 - - gmx:100803341 471.47