Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0245 ATGCCTCGTCCTTCTTTTCACAAGCTTATTCTCCCCACCACCCTCCAATCCAGACAACTGAGGATTCCAGATAATTTCCTGAGGAAATATGGGGGGCAACTTTCTACAATTGCTACCCTGACTGTTCCTGATGGTAATGTTTGGCGTATAGGTTTGAAAAAGGCAGACAACAGAATTTGGTTCGTTGATGGTTGGCAAGAATTTGTTCAACGCTACTCCATTGGCATTGGATATTTCTTGGTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTTAATTTGAGTACTTCTGAGGTAAATTATCAATCAGTCATGAGAAACCGTAATGAAGGGCCTTGCTTTGCAAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCTTTGATTTGTCGGATTCGTCAACTCCATACCTTACGTCTGGTGCATTGCAAAACAAGGTTTTTGCTGGACCTGTGAATCAAATGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTTAATGGTGGGTCTAAACTTAATCGCGTAAACTGGGGAGATAGTGGAAGTGTTTTTCCTCCAAAGGGTGCCAATTCGCAAGACCATCCATCAACCAGAGACATCGGTGTTCAGTTTAATGCTATTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTTTTCCAATGAGGAAGGGGTTAATAAGACTGCAACTGCAAGAAAGAAGCGGAAAGTAGATCCCAATGGTGAGGAACCCTCTGGTGAAAATGAAGATGAGGTAGAAATGCGCTACAGGTTTTATGAAAGTGCATCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCTTCGTGCTTTGCCGAAAAGAATCTCAACGGGGTTTCAGGATTCATTAAACTTCAGATCTCCAATGGGAGACAATGGCCAGTTCGCTGCCTTTATAGAGGAGGTAGAGCAAAGTTAAGCCAGGGATGGTTTGAATTTACATTGGAGAACAATTTGGGGGAAGGTGATGTATGTGTGTTTGAGCTGCTTAGAATGAAGGAGGTTGTGCTGCAAGTTACTGTATTTCGAGTAACTGAGGATGCTGCAGGGTTGATGAACCCTTCCCCTATGCAACAGCAGGGCCAAAATGTGAGTCACACTAAACTCTTGAACCCTCACTTGCAGCATCGCGTCAGCACAACCAAATTGGTCAGAAATTAG 1311 0.4203 MPRPSFHKLILPTTLQSRQLRIPDNFLRKYGGQLSTIATLTVPDGNVWRIGLKKADNRIWFVDGWQEFVQRYSIGIGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSVMRNRNEGPCFANYHHIFDEMEDVDSFDLSDSSTPYLTSGALQNKVFAGPVNQMTPGKSHTPALQNLFNGGSKLNRVNWGDSGSVFPPKGANSQDHPSTRDIGVQFNAIEFKRSTEELKLRFSNEEGVNKTATARKKRKVDPNGEEPSGENEDEVEMRYRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAAGLMNPSPMQQQGQNVSHTKLLNPHLQHRVSTTKLVRN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0245 436 Gene3D - 277 397 IPR015300 -
Apr7g0245 436 SMART B3_2 6 98 IPR003340 GO:0003677
Apr7g0245 436 SMART B3_2 300 395 IPR003340 GO:0003677
Apr7g0245 436 Gene3D - 1 99 IPR015300 -
Apr7g0245 436 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Apr7g0245 436 PANTHER B3 DOMAIN-CONTAINING 1 426 - -
Apr7g0245 436 SUPERFAMILY DNA-binding pseudobarrel domain 293 394 IPR015300 -
Apr7g0245 436 MobiDBLite consensus disorder prediction 231 252 - -
Apr7g0245 436 CDD B3_DNA 298 393 IPR003340 GO:0003677
Apr7g0245 436 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Apr7g0245 436 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Apr7g0245 436 Pfam B3 DNA binding domain 303 393 IPR003340 GO:0003677
Apr7g0245 436 Pfam B3 DNA binding domain 11 96 IPR003340 GO:0003677
Apr7g0245 436 CDD B3_DNA 4 96 IPR003340 GO:0003677
Apr7g0245 436 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 426 - -
Apr7g0245 436 MobiDBLite consensus disorder prediction 231 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0245 Apr-Chr7 7644622 7650696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0245 1 396 B3 DNA Binding Superfamily AT3G18990 51.485 3.43e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr7g0245 B3 7.1e-16 CL0405