Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0215 ATGGCAGCACCTTTTTCTGCAGCATCGCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAACAACAACATTCCTCAACCCCGCCATCATCTTCAACAACTCCAGCTGCACCCCCTCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCGGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAGCACTATTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCCAAAACCTGTGGCACCAGAGAGTACAGATGTGACTGTGGCACCCTCTTCTCGAGGCGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCACTGGCACAAGAAAGTGCAAGACAACCACCCAACCTGAGCAGTGCTATTGGCAACCAAATCTATGGAAACAGCAACATATCCTTAGGCTTATCTCAAATGGGTCCACAGATCCCCTCCATTCATGACCAAAACACCCAATCTAGTGACCTATTGCGTTTTGGTGCTGCAAGGACTGGTCAATTTGACCACATTCTCCCACCAACCCTTGCCTCCTCCTTTAGACCCTCACACCACCACACCATGCAAACCCCTTCATTCTTCATGCCAGAACCAAACCAAAACCAAAATTACCAGCATGATCATCACCAGCCTCAACAAGGGTTAGTGTCAAACAAGTCATTCCAAGGATTAATACAACTCTCTGACCTTAACAATAACATCAACAATTCCCCTTCTGGATCCAACCTCTTCAACCATCCCTTTCTATCCAACCGAGCCAGTAATAACAACAACATTGTTGAAGATCAACACTTCAACAATGAAGGGTCAAATTTCTTCCCAGAAAGTACCATATTGGGCATCACTGATCACCAAACAAGCTCAACAACCGTCCCTTCTCTCTTCAGCACCTCTCTTCAAAACAGCACCAACAACAACGTTTCTCACATGTCAGCAACCGCATTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCAGCAGCAACAACAACAACCCTGCCTCTTCCCTCCTCAGAAACTTAGGGTCCAAATCTGATCACAGGCCACTTTCTACTTCTGCAAACTATAGCAGCATTTTCAACAACCTGCAAGACATGATGAACATTCCCGGGTTTGAAGTAGCATATGATCATGGGATGAACACCAGAGAACCAAAACTTCAAGGAGTGGGTGTTAACGTTGGAGGTTCTGATAGGCTCACGAGGGACTTTCTTGGCGTCGGTGGTCAGAATCAGATGGTGAGAAGTATGAGTGGTGGAAGTGGAGGAGCTTCACAACAACGTGGTTTCAACTTAAGCTGCTCGGAAGCTGAGACAAATAATGCTGCGCCGTCAGGTCAAGCTTTCGGTGGTGGAGCGAACTTTCAGTGA 1650 0.4661 MAAPFSAASLFGIREEDQNQMKQQQHSSTPPSSSTTPAAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSSAIGNQIYGNSNISLGLSQMGPQIPSIHDQNTQSSDLLRFGAARTGQFDHILPPTLASSFRPSHHHTMQTPSFFMPEPNQNQNYQHDHHQPQQGLVSNKSFQGLIQLSDLNNNINNSPSGSNLFNHPFLSNRASNNNNIVEDQHFNNEGSNFFPESTILGITDHQTSSTTVPSLFSTSLQNSTNNNVSHMSATALLQKAAQMGAASSSSSNNNNPASSLLRNLGSKSDHRPLSTSANYSSIFNNLQDMMNIPGFEVAYDHGMNTREPKLQGVGVNVGGSDRLTRDFLGVGGQNQMVRSMSGGSGGASQQRGFNLSCSEAETNNAAPSGQAFGGGANFQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0215 549 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Apr7g0215 549 MobiDBLite consensus disorder prediction 1 57 - -
Apr7g0215 549 MobiDBLite consensus disorder prediction 414 442 - -
Apr7g0215 549 MobiDBLite consensus disorder prediction 16 49 - -
Apr7g0215 549 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Apr7g0215 549 SMART c2h2final6 113 143 IPR013087 -
Apr7g0215 549 SMART c2h2final6 148 168 IPR013087 -
Apr7g0215 549 SMART c2h2final6 72 94 IPR013087 -
Apr7g0215 549 MobiDBLite consensus disorder prediction 530 549 - -
Apr7g0215 549 Gene3D Classic Zinc Finger 126 205 - -
Apr7g0215 549 Gene3D Classic Zinc Finger 51 120 - -
Apr7g0215 549 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 457 - -
Apr7g0215 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 457 - -
Apr7g0215 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Apr7g0215 549 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0215 Apr-Chr7 6927655 6936068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0215 10 515 IDZ Gene Family AT2G02070 48.677 3.71e-134 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g0215 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0215 K25870 - gmx:100807789 725.702