Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0213 ATGGCTGCTGCTTCCTCATCCACACCTTTCTTGGGAATTAGACAAGAAAATCAAAGTCAGATTGCGCAACACCACCAATCCTCCACAGCTGCTTCCTCAACTACTACTACCACTCCAACAACAGTGCCTCAAAAGAAAAGGAGGAATCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAACAGGTTTATATGTGAGCTGTGCAACAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCGGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTAACTGGCATTAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCAAGGCGTGACAGTTTCATCACTCACAGGGCCTTTTGTGATGCTCTAGCCCATGAGAGTGCAAGACACCCCTCCAACCTGAACCCTTTGGGAACCCATTTGTATGGCACAAACCACATGAACTTAGGCCTTGGTACCCAACTTCAGAACCAAGCCTCCACTAACAGCATATTGAGCCTTGGCAGTGCACCAAAGTTTGAGCATTTAGTCTCACCCAATCTGCATCACTCTTCATCATTTGGAGTACAGTCACCCCAATCATCTTTCTTCATGACTGACCCAAGTCAAGCATTTCACGACCTCCAATCTCAGCAACAAGGATCATTATTCTCAAGCAATAAGCAACTGCATGGTCTTATGCAACTTCCTGATCTTCAAGGAACCACTAATAACTCCACTTCTGCATCATCAGTATCTGCTAATTCAGCTAATACCAATTTCTTTAACCTCAGCTTCTTTCCAAATACCAATAGCAGTGGCAGCATAATCAATGATCAATTCAACAACTTAGGTGGAGGTAACAACCAAGGAACAACAACACTCTACAGTACTAATAGCCCTGTAAGTAACCAGGTTGGGTCAGGCTTGTCTTCACTCTTTGGCAATTCATCAGTGCAACAAGAGAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACTACAACCACCAATGGAGCAGAAGAATTAGGTGTAAGATCAAGCATGGAAAATATGCACAATAATCATCTACGTGGATTGATCAACTCTCTTGCCAATGGAAACACTTCCATATTTGGCAATGTGAAAGGGAACGAAAACAACCTTAGCCAGTTTCATAATGTGGTAGAGGAGCCCAAAAAGTTGTCACAAAATCTTGGTGTGTGCTTTGGAGGATCTGATAAGTTGACGTTGGACTTTTTGGGTGTTGGAGGAATGGTGAGGAACATGAGCAGTGGTGGGTTTTCACAGAGAGAGCAGCAACACTCCATGGGTACCATGACCCCCTTGGATACAAAGTTAGAATCAGCACAAGCAAACCAACCTTATGGAACCTCAACACTACAATGA 1629 0.4457 MAAASSSTPFLGIRQENQSQIAQHHQSSTAASSTTTTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICELCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHLYGTNHMNLGLGTQLQNQASTNSILSLGSAPKFEHLVSPNLHHSSSFGVQSPQSSFFMTDPSQAFHDLQSQQQGSLFSSNKQLHGLMQLPDLQGTTNNSTSASSVSANSANTNFFNLSFFPNTNSSGSIINDQFNNLGGGNNQGTTTLYSTNSPVSNQVGSGLSSLFGNSSVQQENMSPHMSATALLQKAAQMGSTTTTNGAEELGVRSSMENMHNNHLRGLINSLANGNTSIFGNVKGNENNLSQFHNVVEEPKKLSQNLGVCFGGSDKLTLDFLGVGGMVRNMSSGGFSQREQQHSMGTMTPLDTKLESAQANQPYGTSTLQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0213 542 Gene3D Classic Zinc Finger 57 122 - -
Apr7g0213 542 MobiDBLite consensus disorder prediction 1 58 - -
Apr7g0213 542 Gene3D Classic Zinc Finger 128 207 - -
Apr7g0213 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Apr7g0213 542 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 513 - -
Apr7g0213 542 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Apr7g0213 542 SMART c2h2final6 150 170 IPR013087 -
Apr7g0213 542 SMART c2h2final6 115 145 IPR013087 -
Apr7g0213 542 SMART c2h2final6 74 96 IPR013087 -
Apr7g0213 542 MobiDBLite consensus disorder prediction 1 48 - -
Apr7g0213 542 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Apr7g0213 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 513 - -
Apr7g0213 542 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0213 Apr-Chr7 6868433 6874684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0213 10 508 IDZ Gene Family AT2G02070 48.036 5.48e-131 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g0213 zf-C2H2_jaz 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0213 K25870 - gmx:100806198 816.609