Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0212 ATGAAACCCGACTTGTACGAAATCTCAGACGACGAATGGGAGAATCACTCCTTCAAACCCTCTCGAGTTCTCAAGCGTCCTCGCGCTTCCTCTCCCTCTCCCCCTCCGCCACCTATCGAATCCTTCGCTTATACCCCTAATGTCAGCGTCCACGATTCCAGCGACGAAGATTGCGTCGAAATTGCGCCTCAAAACCTCCATGATCTCGAAGATGCTGACGTCGACAACGACGGTGGCGGTTACGCGGCGGCGAGCCGCGGACGGCGGTTTATAATCGATGACGATGATGATGATGGCGCCGGCGAGAGGGATAGAGACATTGAGGAGTTGTACGAGGTAGAGTCGAGCGAGGAGGAAGACGGAGACGAAGGGGATGTGGTTGGTAGGGCTTTGCACAAGTGTTCGAGAATCTCTGCGGAGTTGAAGGGAGAACTCTTCGGCTCTACGGGGACCGCTTGCGAGAGGTATTCCGAGGTCGAATCTTCTTCAGTGAGAATCGTGACACAGGAGGATGTTGATGTTGCGTGCGGGTCTGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGTGTCAATTTTTTGCTTCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCGGATGAAATGGGCCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACACTTGCACCAAGATTCTGGTCCACATCTTATAGTATGCCCTGCATCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAAATGGTGCCCGTCCTTTTCCGTCCTTCAATATCATGGGGTTAGACGTGCGGCATACTGCAAGGAGTTGAGTTCACTGTCCAAGGCGGGAATTCCTCCTCCATTTAACGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGATGGAGGTGGAGCTGTGTGCTAATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTAATGTCTGTTGCACGAAATGCAAACCAACGCTTGATGCTGACAGGGACACCACTTCAGAATGATCTACATGAATTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTAGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGCCGTCTGAAATCTGATGTAATGCAACAACTCGTTCCAAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAGCAGGAAAATGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCTCGGCTGGCAAAATGTTCTGGGCTTAATTCAAAAAATGTGCTTGAAGTTCTTCCTCGACGGCAGATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCATCCCTTGTTGATAAGGCGAATCTACAATGATGAGGATGTTGTTCGCTTTGCTAAAAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACATTGGACAGAGTTATGGAGGAGCTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCAAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCGCTAAAGAAGGGTGGACATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGACATATTGGAGTGGTCTTTGGATGTCATTGGATTGACCTACAAACGGCTTGATGGAAGTACACAGGTAGCAGAGAGGCAAACAATAGTTGACACATTCAATAATGATACTTCGATATTTGCATGCTTGCTTTCTACGAGAGCTGGTGGACAAGGCTTAAATTTAACGGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAATCCACAGATTGACAGACAAGCAGAAGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACAAGGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAGATTAGTGAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCTCAATTTTGTTGAGCTAA 2211 0.4464 MKPDLYEISDDEWENHSFKPSRVLKRPRASSPSPPPPPIESFAYTPNVSVHDSSDEDCVEIAPQNLHDLEDADVDNDGGGYAAASRGRRFIIDDDDDDGAGERDRDIEELYEVESSEEEDGDEGDVVGRALHKCSRISAELKGELFGSTGTACERYSEVESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHQDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGVRRAAYCKELSSLSKAGIPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLISRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQENAYKEAIEEYRAVSQARLAKCSGLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFAKKLHPIGAFGFECTLDRVMEELKSYNDFSIHRLLLHYGVNDRKGILQDKHVMLSAKCRALAELLPSLKKGGHRVLIFSQWTSMLDILEWSLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEISEGDMPEKTMGEILSSILLS* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0212 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 717 IPR027417 -
Apr7g0212 736 SMART helicmild6 592 675 IPR001650 -
Apr7g0212 736 Pfam Helicase conserved C-terminal domain 563 675 IPR001650 -
Apr7g0212 736 MobiDBLite consensus disorder prediction 1 55 - -
Apr7g0212 736 CDD DEXHc_Snf 187 380 - -
Apr7g0212 736 CDD SF2_C_SNF 553 686 - -
Apr7g0212 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 378 IPR014001 -
Apr7g0212 736 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 66 734 - -
Apr7g0212 736 MobiDBLite consensus disorder prediction 1 21 - -
Apr7g0212 736 Pfam SNF2-related domain 207 493 IPR000330 GO:0005524|GO:0140658
Apr7g0212 736 SMART ultradead3 183 388 IPR014001 -
Apr7g0212 736 Gene3D - 166 438 IPR038718 -
Apr7g0212 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 413 IPR027417 -
Apr7g0212 736 Gene3D - 544 731 IPR027417 -
Apr7g0212 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 566 717 IPR001650 -
Apr7g0212 736 PANTHER SNF2/RAD54 HELICASE FAMILY 66 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0212 Apr-Chr7 6836314 6857482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0212 208 714 RAD5 or RAD16-like Gene Family AT5G22750 27.229 5.46e-47 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr7g0212 SNF2_N 6.7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0212 K14439 - gmx:100806323 1256.12