Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0207 ATGGAACATGGGGGTAATCTGCCAAATCCATTGTTTCTCAAGCCTCCAGATGACACTAAATGGGAAGTACACTGGACTAAACATGATGGTGCTATTTGGCTTGAAAAGGGTTGGAAGGAGTTTGCTACATACTACACCTTAAGTCATGGGCATTTGATAGTATTTGAATACCAAGAAACATTTCACTTGGAGGTGCACATATTTGACCAGAGTTGCCTCGAAATTAAATATCCTTTCCATGACACTCAAAATGATCATGACAGCTTTGTTCATGTCACCAATGATACTGTTAAAATTTTGGAAGAGGTGACTCCAACTCAAAACAATAAACTCATATCACCCATATCCATATCATGCCCTCCGCCAAGTAAGAAATTGAGAACAACCACAAGCGGAGTTGTTGGAAGTAGCTCCAATTTGCAACAAATGACTCAATATGTCCAAATCCATAGCAACAAGACTCAGGGCACTAATTTTCAGGAGTCAACATTAGCATCTGTGGGGGAAGTATTAGACGGTAATGTCAATGAGAACCCGAAAATGGAGCAATTGACTTCAAAAATTAATGCAGCTTTAAACGAAGCTGCAACCTTCAAATCTAACAATCCATCTTGCACGGTTGTCTTGAAGCCTTCCTATGTATTTGGACGTTCTTTGTTCAAGGAGATGGATTTAATTGCATATACCCTAAGAGAATCCCATATTTTAGAAGCAGAACTTTTATTCCTAAAGAAGATAATTTACAATTGTCATGCCTTAGGTAGGTGGAAGGAGACTGAAAAAACTTCACAGTCGAGTAGTCCACAATCATTCACAAATGGAGCTATGAAAGAAGCTAAAATGTTCACCTCTGAAAATCCTTATTTTAGATTCAAAATAAAGTCAGATCACAAGCGGGATTACAGACCGGTTGTACCAATTGCCTTCATGAGAGATTACTTCAGTAACAAGAAGACTGTGATGTTACAGTTAGGTAATAAGTTATGGCCTGTAAGTTTGCTCCGTTCAATGGGTGTTCCAACGAAGTTGTCTAAGGGTTGGGCCCTATTTGAGAAAGAAAGTAAATTGCTAGTTGGAGACGTTTGCATCTTTGAGCTCATCAACATAGAAGATGCCGTGTTTTATGTTCATATTTTCAGAGGCCAACCTTAG 1152 0.388 MEHGGNLPNPLFLKPPDDTKWEVHWTKHDGAIWLEKGWKEFATYYTLSHGHLIVFEYQETFHLEVHIFDQSCLEIKYPFHDTQNDHDSFVHVTNDTVKILEEVTPTQNNKLISPISISCPPPSKKLRTTTSGVVGSSSNLQQMTQYVQIHSNKTQGTNFQESTLASVGEVLDGNVNENPKMEQLTSKINAALNEAATFKSNNPSCTVVLKPSYVFGRSLFKEMDLIAYTLRESHILEAELLFLKKIIYNCHALGRWKETEKTSQSSSPQSFTNGAMKEAKMFTSENPYFRFKIKSDHKRDYRPVVPIAFMRDYFSNKKTVMLQLGNKLWPVSLLRSMGVPTKLSKGWALFEKESKLLVGDVCIFELINIEDAVFYVHIFRGQP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0207 383 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 259 380 - -
Apr7g0207 383 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 215 - -
Apr7g0207 383 Gene3D - 1 72 IPR015300 -
Apr7g0207 383 SMART B3_2 288 382 IPR003340 GO:0003677
Apr7g0207 383 ProSiteProfiles B3 DNA-binding domain profile. 288 382 IPR003340 GO:0003677
Apr7g0207 383 PANTHER B3 DOMAIN-CONTAINING 2 215 - -
Apr7g0207 383 PANTHER B3 DOMAIN-CONTAINING 259 380 - -
Apr7g0207 383 Gene3D - 269 382 IPR015300 -
Apr7g0207 383 SUPERFAMILY DNA-binding pseudobarrel domain 282 380 IPR015300 -
Apr7g0207 383 CDD B3_DNA 287 380 IPR003340 GO:0003677
Apr7g0207 383 ProSiteProfiles B3 DNA-binding domain profile. 1 71 IPR003340 GO:0003677
Apr7g0207 383 CDD B3_DNA 4 69 IPR003340 GO:0003677
Apr7g0207 383 SUPERFAMILY DNA-binding pseudobarrel domain 2 71 IPR015300 -
Apr7g0207 383 Pfam B3 DNA binding domain 291 381 IPR003340 GO:0003677
Apr7g0207 383 Pfam B3 DNA binding domain 10 70 IPR003340 GO:0003677
Apr7g0207 383 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0207 Apr-Chr7 6722745 6724607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0207 275 380 REM Transcription Factor Family AT1G49480 39.091 2.07e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr7g0207 B3 9.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0207 - - aprc:113870080 776.163