Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0196 ATGAGTTCTCGGGCGGTGAGGACTAATAACCGTCGCAGAAAGACGCCTTTCCAGCTGGACCTCAACAGTGAACCGCCTGAGAATCTTCCGGAAGACAACGAAGAGGGTCCCTCCATTCAAGTTCCCATGATTGATGTTGACGCCATTGATGATGATGTCATTGAATCTTCACCTAGGGCTTTCGCTCAGGCTAAAAACAATTCGAGGAGGATTCGCAGAAGGACTGTTGTTGATGTGGATTTAGAAGATCGGGCCAGGCAAGATCCCCAAAATCAAACAGTCATCAATTTGGAAAGCAGTAGCAGTTCTATGAGTGAGAATGCAAGAAAGTCACCCGAACCTCCTAAGGAACCTGTCTTCAATTGCCCAATATGCATGGGCCCTTTGGTAGAAGAAATGTCAACAAAATGTGGTCATATTTTTTGCAAGGGTTGCATTAAAACAGCAGTAACTGCACAGGGAAAATGCCCTACCTGTAGAAAAAAGGTTTATCCAAGAGACCTAATAAGGGTGTTTCTCCCTGCAACTAGTTAA 534 0.4494 MSSRAVRTNNRRRKTPFQLDLNSEPPENLPEDNEEGPSIQVPMIDVDAIDDDVIESSPRAFAQAKNNSRRIRRRTVVDVDLEDRARQDPQNQTVINLESSSSSMSENARKSPEPPKEPVFNCPICMGPLVEEMSTKCGHIFCKGCIKTAVTAQGKCPTCRKKVYPRDLIRVFLPATS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0196 177 MobiDBLite consensus disorder prediction 88 109 - -
Apr7g0196 177 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Apr7g0196 177 PANTHER ELFLESS, ISOFORM B 2 177 - -
Apr7g0196 177 SMART ring_2 122 159 IPR001841 -
Apr7g0196 177 SUPERFAMILY RING/U-box 121 166 - -
Apr7g0196 177 ProSiteProfiles Zinc finger RING-type profile. 122 160 IPR001841 -
Apr7g0196 177 Pfam Zinc finger, C3HC4 type (RING finger) 121 159 - -
Apr7g0196 177 MobiDBLite consensus disorder prediction 1 38 - -
Apr7g0196 177 MobiDBLite consensus disorder prediction 82 116 - -
Apr7g0196 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0196 Apr-Chr7 6434301 6439193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0196 9 176 C3H Transcription Factor Family AT5G48655 48.000 3.10e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0196 K22651 - gmx:100778432 197.208