Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0192 ATGGACGATAAATCAGATCCTAAAGCTGATGCTACTGCAACGCCACTTCCCCGAAACGGAAAGAGGGAAGTTGAGGGTGTAGATGAAAAGCAAGTGAGTGCAAAGAAGCAGAAGAGAGAAGAAGTCGCTGAGGAGCAAAAGAACATTGAAGAAGTTATTTCTGATGATTTCTTTTCAGATTCTGAGCCGGATAAGAGGAATGTGTATATTGATTGTGACAATTCTGAAAAAAGTGATGAAGAAGCACAAGAGAAAAAGATGGAAGTTTTGATGGATGCTGTGTCAAATGCTCAGGGACGTGATTTAAAATTGTTTGAAAATGATCTTTCTAGTTATAATTCAGATGAGGATGAGGATGGCTCTGATGTTATTGAAAAGCTACATATGATTGCAAATCCTAAAACGCTAGCTACTCCAAAAGAAGATGATGCATCAAAGACAATATATACTGGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGAGGATCTCTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATCATGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCTACAGCTGAAGCAGCACAAAAAGCTCTTCAGTTGAATAATACAGAATTGTTGAGATGTCCTATCAGAATTGATATAGCTCAAGAAAAGGGAAAATCTAACCCCAATAGAAGCAGTTGGAGATTCCAGAAGTGTGAAAGGATTCAGGGCATCAAAGGTACACAGAGTTCGGAGTATTGTGAGGAAGAAATTGAGGGAATAGCTTCCAAAATTCCTTGGGAAAGTCCAAAAATGCTAGCTACTTGGAAAGAACAAAATGATACATCAAAAACAATATATGTGAGAAACTTGTCATACAGTGCGGAACGGGCTGATATGGAAATTCTTTTCAAAGAGTGTGGGGAAATTATTGATGTTCATCTAAATACGGATCATGAAGGGAGGTTTAGTGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACGAAAAGCTCTTGGATTGGATAATACAGAATTATTGAGACGTCGCATTAGAGTTGGTATAGCTCAAGAAAAGGGTGAATATGCTTCCAATAGAAGAATCTGGACCAACACATTCCAGAAAAGTGAAAGAATTCAGCCCATCAAAGGTACAGAGAGTTCAGAGTCCTGTGAGGCAGAAATTGAGGGAAAGGCTTCCAAAAGTCCTTGGGAAATTCCTAAAATGCTTGCTACTTTGGAAGAAAAAAGTGCTCCATCAAAGATAATACGTGTCAGAAACTTGTCATACAGAGTGGAACGGGCAGATATAGAAACTCTTTTCAAAGAGTGCGGGCAAATTGTTGATGTTCGTCTAAATATGGATCATGAAGGGAGGTTTAGAGGTTTTGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACAAAAAGCTCTTGAATTGGACAATACAGAATTGCTGAGTCGTCGCATTAGTGTTGGTATAGCTCAAGAAAAGGGAGGGTATACCTTCAATAGAAGGATTCAGCCCATCAAAGGTGCAGAGAATTCAGAGTACTGCGAGCAGGATATTGAGGGAAAAGCCTACAAAAGTCCTTGGGAAAATCCTAAAATGCTTGCTAGTTGGAAAGAAAAAAATGATCCATCCAAGACAATATGTGTTAGAAACTTGTCATACAGAGTGGAACGTGCTGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGACGTTCATCTACATACAGATCACGAGGGGAGGTTAAATGGATTTGGACAAGTTGAGTTTGCGACCGTAGAAGCTGCACAAAGAGCTCTTGATTTGGATAATACAGAATTGTTGAGACGACGCATTAGAGTTGGTATAGCTCGAGAAAAGGGTGAATATACTCACAATAGAAGTAACTGTAGCAACTGGAGCAATTCATTCCAAACGAGTGGAAGAGTTCAGGCCATGAAAGATACAGATCATTTGGAGGACTGTGGAGAAGAAATTGAGGAAAAAGCCTGGAAAACTCAGGAAAGTCCTACAACACTAGCTACTCCAAGAGAACAACATGCTGCCTCGAAGACAATATTTGTTGGAAACTTGTCATATGGAGTGGGACGAGCTGATGTGGAATATCTTTTCAAAGAATGTGGAGAAATTGTTGATGTTCGTCTACATACCGATCATGAAGGGAGGCCAAGAGGATTTGGACATGTTAAGTTTGCAACAGCTCAAGCTGTACAAAAAGCTCTTGAGTTGGATAACACAGAATTGTTAAGACGTCCCATCAGAGTTGAATTGGCTCGAGAAAAGGGTGAATATACCCACAATAGTAGGAACAACTCATTCCAGAAGAGTGAAAGAATTCAGTCGCTAACAGTATTTGTTAAGGGTTTTGATAGATCCCTTGCAGAAGAGAAGATAAAAGCTAGCCTGGAAGAGCATTTCAGGTCTTGTGGAGACATTGCAAGGATATCAATTCCAAAATTTCATAATTCCGGGGATGCTAAGGGGTTTGCTCACTTGGACTTCAAGGATGTTGACAGTGTGAAGAAAGCTCTACATCTTGATCAAACTGAGCTGGGAGGTTATCCCTTGTCTGTTGAAAAAGCAAAGCCTCGATGTGATAATCAGCGTAGATGTGGTGGTAGTCGTCATCAGTTTGGTGGAAGGGATGGAAGTGCTTATAATGGTAGAGTGGATTGGGGGACAAGTGGTGGTGGTTGTGGGTGGCATTCTTCATTTTTCTGA 2742 0.4048 MDDKSDPKADATATPLPRNGKREVEGVDEKQVSAKKQKREEVAEEQKNIEEVISDDFFSDSEPDKRNVYIDCDNSEKSDEEAQEKKMEVLMDAVSNAQGRDLKLFENDLSSYNSDEDEDGSDVIEKLHMIANPKTLATPKEDDASKTIYTGNLSYSVERADMEDLFKECGEIVDVRLHTDHEGRFRGFGHVEFATAEAAQKALQLNNTELLRCPIRIDIAQEKGKSNPNRSSWRFQKCERIQGIKGTQSSEYCEEEIEGIASKIPWESPKMLATWKEQNDTSKTIYVRNLSYSAERADMEILFKECGEIIDVHLNTDHEGRFSGFGHVEFATAEAARKALGLDNTELLRRRIRVGIAQEKGEYASNRRIWTNTFQKSERIQPIKGTESSESCEAEIEGKASKSPWEIPKMLATLEEKSAPSKIIRVRNLSYRVERADIETLFKECGQIVDVRLNMDHEGRFRGFGHVEFATAEAAQKALELDNTELLSRRISVGIAQEKGGYTFNRRIQPIKGAENSEYCEQDIEGKAYKSPWENPKMLASWKEKNDPSKTICVRNLSYRVERADMEILFKECGEIVDVHLHTDHEGRLNGFGQVEFATVEAAQRALDLDNTELLRRRIRVGIAREKGEYTHNRSNCSNWSNSFQTSGRVQAMKDTDHLEDCGEEIEEKAWKTQESPTTLATPREQHAASKTIFVGNLSYGVGRADVEYLFKECGEIVDVRLHTDHEGRPRGFGHVKFATAQAVQKALELDNTELLRRPIRVELAREKGEYTHNSRNNSFQKSERIQSLTVFVKGFDRSLAEEKIKASLEEHFRSCGDIARISIPKFHNSGDAKGFAHLDFKDVDSVKKALHLDQTELGGYPLSVEKAKPRCDNQRRCGGSRHQFGGRDGSAYNGRVDWGTSGGGCGWHSSFF* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 359 IPR000504 GO:0003723
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 691 767 IPR000504 GO:0003723
Apr7g0192 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 383 508 - -
Apr7g0192 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 47 368 - -
Apr7g0192 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 517 759 - -
Apr7g0192 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 784 898 - -
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 498 IPR000504 GO:0003723
Apr7g0192 913 CDD RRM1_NUCLs 147 223 IPR034349 -
Apr7g0192 913 CDD RRM1_NUCLs 692 768 IPR034349 -
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 781 896 IPR035979 GO:0003676
Apr7g0192 913 MobiDBLite consensus disorder prediction 1 70 - -
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 791 863 IPR000504 GO:0003723
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 693 761 IPR000504 GO:0003723
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 552 620 IPR000504 GO:0003723
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 353 IPR000504 GO:0003723
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 491 IPR000504 GO:0003723
Apr7g0192 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 215 IPR000504 GO:0003723
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 542 649 IPR035979 GO:0003676
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 128 232 IPR035979 GO:0003676
Apr7g0192 913 MobiDBLite consensus disorder prediction 21 70 - -
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 415 507 IPR035979 GO:0003676
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 275 370 IPR035979 GO:0003676
Apr7g0192 913 SMART rrm1_1 147 218 IPR000504 GO:0003723
Apr7g0192 913 SMART rrm1_1 551 622 IPR000504 GO:0003723
Apr7g0192 913 SMART rrm1_1 423 494 IPR000504 GO:0003723
Apr7g0192 913 SMART rrm1_1 790 866 IPR000504 GO:0003723
Apr7g0192 913 SMART rrm1_1 692 763 IPR000504 GO:0003723
Apr7g0192 913 SMART rrm1_1 284 355 IPR000504 GO:0003723
Apr7g0192 913 Coils Coil 35 55 - -
Apr7g0192 913 Gene3D - 127 246 IPR012677 -
Apr7g0192 913 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 383 508 - -
Apr7g0192 913 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 517 759 - -
Apr7g0192 913 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 784 898 - -
Apr7g0192 913 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 47 368 - -
Apr7g0192 913 Gene3D - 779 897 IPR012677 -
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 222 IPR000504 GO:0003723
Apr7g0192 913 SUPERFAMILY RNA-binding domain, RBD 682 773 IPR035979 GO:0003676
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 550 626 IPR000504 GO:0003723
Apr7g0192 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 789 870 IPR000504 GO:0003723
Apr7g0192 913 Gene3D - 510 637 IPR012677 -
Apr7g0192 913 Gene3D - 642 778 IPR012677 -
Apr7g0192 913 Gene3D - 247 368 IPR012677 -
Apr7g0192 913 Gene3D - 372 503 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0192 Apr-Chr7 6230110 6263525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0192 552 877 Eukaryotic Initiation Factors Gene Family AT1G34140 22.485 1.46e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0192 - - aprc:113868402 1845.48