Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr7g0192 | ATGGACGATAAATCAGATCCTAAAGCTGATGCTACTGCAACGCCACTTCCCCGAAACGGAAAGAGGGAAGTTGAGGGTGTAGATGAAAAGCAAGTGAGTGCAAAGAAGCAGAAGAGAGAAGAAGTCGCTGAGGAGCAAAAGAACATTGAAGAAGTTATTTCTGATGATTTCTTTTCAGATTCTGAGCCGGATAAGAGGAATGTGTATATTGATTGTGACAATTCTGAAAAAAGTGATGAAGAAGCACAAGAGAAAAAGATGGAAGTTTTGATGGATGCTGTGTCAAATGCTCAGGGACGTGATTTAAAATTGTTTGAAAATGATCTTTCTAGTTATAATTCAGATGAGGATGAGGATGGCTCTGATGTTATTGAAAAGCTACATATGATTGCAAATCCTAAAACGCTAGCTACTCCAAAAGAAGATGATGCATCAAAGACAATATATACTGGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGAGGATCTCTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATCATGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCTACAGCTGAAGCAGCACAAAAAGCTCTTCAGTTGAATAATACAGAATTGTTGAGATGTCCTATCAGAATTGATATAGCTCAAGAAAAGGGAAAATCTAACCCCAATAGAAGCAGTTGGAGATTCCAGAAGTGTGAAAGGATTCAGGGCATCAAAGGTACACAGAGTTCGGAGTATTGTGAGGAAGAAATTGAGGGAATAGCTTCCAAAATTCCTTGGGAAAGTCCAAAAATGCTAGCTACTTGGAAAGAACAAAATGATACATCAAAAACAATATATGTGAGAAACTTGTCATACAGTGCGGAACGGGCTGATATGGAAATTCTTTTCAAAGAGTGTGGGGAAATTATTGATGTTCATCTAAATACGGATCATGAAGGGAGGTTTAGTGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACGAAAAGCTCTTGGATTGGATAATACAGAATTATTGAGACGTCGCATTAGAGTTGGTATAGCTCAAGAAAAGGGTGAATATGCTTCCAATAGAAGAATCTGGACCAACACATTCCAGAAAAGTGAAAGAATTCAGCCCATCAAAGGTACAGAGAGTTCAGAGTCCTGTGAGGCAGAAATTGAGGGAAAGGCTTCCAAAAGTCCTTGGGAAATTCCTAAAATGCTTGCTACTTTGGAAGAAAAAAGTGCTCCATCAAAGATAATACGTGTCAGAAACTTGTCATACAGAGTGGAACGGGCAGATATAGAAACTCTTTTCAAAGAGTGCGGGCAAATTGTTGATGTTCGTCTAAATATGGATCATGAAGGGAGGTTTAGAGGTTTTGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACAAAAAGCTCTTGAATTGGACAATACAGAATTGCTGAGTCGTCGCATTAGTGTTGGTATAGCTCAAGAAAAGGGAGGGTATACCTTCAATAGAAGGATTCAGCCCATCAAAGGTGCAGAGAATTCAGAGTACTGCGAGCAGGATATTGAGGGAAAAGCCTACAAAAGTCCTTGGGAAAATCCTAAAATGCTTGCTAGTTGGAAAGAAAAAAATGATCCATCCAAGACAATATGTGTTAGAAACTTGTCATACAGAGTGGAACGTGCTGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGACGTTCATCTACATACAGATCACGAGGGGAGGTTAAATGGATTTGGACAAGTTGAGTTTGCGACCGTAGAAGCTGCACAAAGAGCTCTTGATTTGGATAATACAGAATTGTTGAGACGACGCATTAGAGTTGGTATAGCTCGAGAAAAGGGTGAATATACTCACAATAGAAGTAACTGTAGCAACTGGAGCAATTCATTCCAAACGAGTGGAAGAGTTCAGGCCATGAAAGATACAGATCATTTGGAGGACTGTGGAGAAGAAATTGAGGAAAAAGCCTGGAAAACTCAGGAAAGTCCTACAACACTAGCTACTCCAAGAGAACAACATGCTGCCTCGAAGACAATATTTGTTGGAAACTTGTCATATGGAGTGGGACGAGCTGATGTGGAATATCTTTTCAAAGAATGTGGAGAAATTGTTGATGTTCGTCTACATACCGATCATGAAGGGAGGCCAAGAGGATTTGGACATGTTAAGTTTGCAACAGCTCAAGCTGTACAAAAAGCTCTTGAGTTGGATAACACAGAATTGTTAAGACGTCCCATCAGAGTTGAATTGGCTCGAGAAAAGGGTGAATATACCCACAATAGTAGGAACAACTCATTCCAGAAGAGTGAAAGAATTCAGTCGCTAACAGTATTTGTTAAGGGTTTTGATAGATCCCTTGCAGAAGAGAAGATAAAAGCTAGCCTGGAAGAGCATTTCAGGTCTTGTGGAGACATTGCAAGGATATCAATTCCAAAATTTCATAATTCCGGGGATGCTAAGGGGTTTGCTCACTTGGACTTCAAGGATGTTGACAGTGTGAAGAAAGCTCTACATCTTGATCAAACTGAGCTGGGAGGTTATCCCTTGTCTGTTGAAAAAGCAAAGCCTCGATGTGATAATCAGCGTAGATGTGGTGGTAGTCGTCATCAGTTTGGTGGAAGGGATGGAAGTGCTTATAATGGTAGAGTGGATTGGGGGACAAGTGGTGGTGGTTGTGGGTGGCATTCTTCATTTTTCTGA | 2742 | 0.4048 | MDDKSDPKADATATPLPRNGKREVEGVDEKQVSAKKQKREEVAEEQKNIEEVISDDFFSDSEPDKRNVYIDCDNSEKSDEEAQEKKMEVLMDAVSNAQGRDLKLFENDLSSYNSDEDEDGSDVIEKLHMIANPKTLATPKEDDASKTIYTGNLSYSVERADMEDLFKECGEIVDVRLHTDHEGRFRGFGHVEFATAEAAQKALQLNNTELLRCPIRIDIAQEKGKSNPNRSSWRFQKCERIQGIKGTQSSEYCEEEIEGIASKIPWESPKMLATWKEQNDTSKTIYVRNLSYSAERADMEILFKECGEIIDVHLNTDHEGRFSGFGHVEFATAEAARKALGLDNTELLRRRIRVGIAQEKGEYASNRRIWTNTFQKSERIQPIKGTESSESCEAEIEGKASKSPWEIPKMLATLEEKSAPSKIIRVRNLSYRVERADIETLFKECGQIVDVRLNMDHEGRFRGFGHVEFATAEAAQKALELDNTELLSRRISVGIAQEKGGYTFNRRIQPIKGAENSEYCEQDIEGKAYKSPWENPKMLASWKEKNDPSKTICVRNLSYRVERADMEILFKECGEIVDVHLHTDHEGRLNGFGQVEFATVEAAQRALDLDNTELLRRRIRVGIAREKGEYTHNRSNCSNWSNSFQTSGRVQAMKDTDHLEDCGEEIEEKAWKTQESPTTLATPREQHAASKTIFVGNLSYGVGRADVEYLFKECGEIVDVRLHTDHEGRPRGFGHVKFATAQAVQKALELDNTELLRRPIRVELAREKGEYTHNSRNNSFQKSERIQSLTVFVKGFDRSLAEEKIKASLEEHFRSCGDIARISIPKFHNSGDAKGFAHLDFKDVDSVKKALHLDQTELGGYPLSVEKAKPRCDNQRRCGGSRHQFGGRDGSAYNGRVDWGTSGGGCGWHSSFF* | 914 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 283 | 359 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 691 | 767 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 383 | 508 | - | - | |
Apr7g0192 | 913 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 47 | 368 | - | - | |
Apr7g0192 | 913 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 517 | 759 | - | - | |
Apr7g0192 | 913 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 784 | 898 | - | - | |
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 422 | 498 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | CDD | RRM1_NUCLs | 147 | 223 | IPR034349 | - | |
Apr7g0192 | 913 | CDD | RRM1_NUCLs | 692 | 768 | IPR034349 | - | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 781 | 896 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 791 | 863 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 693 | 761 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 552 | 620 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 285 | 353 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 424 | 491 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 215 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 542 | 649 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 128 | 232 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | MobiDBLite | consensus disorder prediction | 21 | 70 | - | - | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 415 | 507 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 275 | 370 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 147 | 218 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 551 | 622 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 423 | 494 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 790 | 866 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 692 | 763 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SMART | rrm1_1 | 284 | 355 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Coils | Coil | 35 | 55 | - | - | |
Apr7g0192 | 913 | Gene3D | - | 127 | 246 | IPR012677 | - | |
Apr7g0192 | 913 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 383 | 508 | - | - | |
Apr7g0192 | 913 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 517 | 759 | - | - | |
Apr7g0192 | 913 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 784 | 898 | - | - | |
Apr7g0192 | 913 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 47 | 368 | - | - | |
Apr7g0192 | 913 | Gene3D | - | 779 | 897 | IPR012677 | - | |
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 222 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | SUPERFAMILY | RNA-binding domain, RBD | 682 | 773 | IPR035979 | GO:0003676 | |
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 550 | 626 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 789 | 870 | IPR000504 | GO:0003723 | |
Apr7g0192 | 913 | Gene3D | - | 510 | 637 | IPR012677 | - | |
Apr7g0192 | 913 | Gene3D | - | 642 | 778 | IPR012677 | - | |
Apr7g0192 | 913 | Gene3D | - | 247 | 368 | IPR012677 | - | |
Apr7g0192 | 913 | Gene3D | - | 372 | 503 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr7g0192 | Apr-Chr7 | 6230110 | 6263525 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr7g0192 | 552 | 877 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 22.485 | 1.46e-09 | 59.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr7g0192 | - | - | aprc:113868402 | 1845.48 |