Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0188 ATGGTGATGGAGGGTATCGATAATTGTGGGAGTAAAAAGCGTAAACGAGGGTTTGCAAAAAAGCTTCAAGTCAATGAAAGTGTGGAGGTGAGGAGTGAAGAGGAGGGCTTGCTAGGATCATGGCACCCGGGGACAGTTATCTATTGTGGGAAGCTGAAACGCCATATCAAATATAAGAATATTTTGGAAAATAATGGGTTGAATTATCTTTTGGACGTGGTGAATGTTCCAAAAGCTTTGGACGGTGAAATTGAATCTTCGTATTGCTATAAGCGTGGCTTCATTAGGCCAATTCCTCCTTTTGTTGATTTTGGGACATTGGACCTTAAATTTGGGCTGTGTGTTGATGTGATCCATAAGGAAGCTTGGTGGGAAGGTGTCATATTTGATCATTGTGATGGAATGAAAACAAGGAGTGTGTTTTTCCCTGATTTGGGAGATGAAATGCAAATTGAAATTCATCAATTGCGGATTACTCAGGACTGGGATGAAGTTACAGGAGAGTGGGAGCAACGAGGGAACTGGGCGTTTCTTGAATTGGTTGAGGAGTGTGAGAGGGAATCTCTTGTTGCTGTTTCAGCTAAGCAAATTTGGTATGATGTACAAGGAAAAGAGGAATTTTCTATGATTGGAGACTGGACATATAATGTGAAGTACTTGTGGAAAAACTTGGTAATGGAGGTAGTAAATGATTACTTAACTCTTACAGTAAAATATGTTATCTCAATCTTAAACCTTCCAGGGAATTTAATAAATGAAACACGAGAGTTGAATTCAGATGAAGCTATGGCTAATGTTGACTTCAACATGACCTTGACTGATAAGGAAATTGATGTGCTGAAAGAACCTATTCCTCCAGTTGAAGTAGTTTCAGGTGCTAATTGTTTTGGAAGAAAAAGAAAACATAGATCCTCAACCCATTTAAGGTCCACATATTGGACACCTCTGATGTTTTCTGAAGTTGAATTATGTCCTGATGCTGTTAGGCAATATGCACTTGGCTCAAGTAAGAGAAGTAGGGAACTTTGGAAGGAAAGACTACAAAAGCATCTTGCATATCTTGGATGGGAAATTGAGTCATCAAATAAATTTAATATCAAACGTTACAGGTATAGATCGCCTGATGAACTAGGCCGAAAGGTTTACTTGTCACTTGTTGAAGTTTGTAAAAGTATGCTAGAGGACCCCAACAAAAACAACTCTTTGCAGTCCCAAAAGAGTAGAATGCATCTTACAGTTGACTCTCATCTATCAAATGTGATTCCAAATCCATCCCAAAAAAATCAGGATCTAAATATCCTTCCTCCCAGTGAAGTTGAACCAGAGTTTTGTCATCAAGCTGTTGTGGAATATTATTATGCACATCAATCCAACAACAATAAGGTTGATAAAAAAAAGTTGATACTGAAAGCAAAGAATCACCTGTTAGCAGAAGGATGGAATTTTGAATATCCACCTCCAACTAATAAGAGAAGAGGAATAAGATACATGTCTCCACAAAATAAGAGATTCACAACACTCCATGCAGCATGCAGATTTTGCATTGAAGAGGGTATTCCTGAATGGGCTATATCTGATATGCAGCCTTCAAATGTCTCTGGCACTAATGAAGAAAATGTTGATCAGGTTTGGAGTGGTGAATTATCACATAGAGTATCCCAATTTCTTCCAAAACACCCTGAGTTAGATGCTATGGATGGTGCTGCTTCAAATAGATTCACTTCAAATCGAAAGAGGAAATGCTTGAGGAATTCAAAATCTAATCTACGTAAGTGTCAAAGCAATGGATTGCCTCCAAGCATGCTAAGATCAAATAAGAGGGTTCAAAATGTGTCTGCTTGTCCATCACAACATAAACCTCTAAATGTTATGTCTTGGTTGATAGACAGCAACGTGGTCTTACCAAGGTCTAAGGTTTATTATAAGGCAAAAGGAAGGCAGCGTACGATTCATACAATGGCTGTAGGGAAAATAACTCACGATGGAATCAAGTGTAACTGTTGCATGAAAATATACAGTCTTGTTGGCTTTGAACATCATGCTAGTGGCATTATTACTTGCAGGCCCTCTTCCAGTATCTTTTTGGAAGATGGTAGATCGCTCTTGGATTGCCAAATGCAAATAATGCAAGATCATAAAACAAACCAAGCTAGTGAAAAACCATTCAGTGAGTTGTGTCAAGGAGACAACGATTACATTTGTTCTGTTTGCCACGACGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTTCGTTCCATAAGATGTGCCTTGGTTTGAAGGATGTCCCTGATGGCATTTGGGTTTGTCCAACGTGTTGTTGTGGGATTTGTGGCCAAAACAAAATCCATGAAGATGAGGATGAACATTTCCGTACTTGTGCTCAGTGTGAACATAAATATCACTTTAGATGCCTTAAAAATGAAGCTGAAGATATATCAAGATATCGGAAAACCTGGTTCTGTGGTAAAGACTGTGAAAAGATATATGAAGGCCTTCACAAACTCCTAGGAGTTCCAGTTTCAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTCATCAACTCCGAGAGTTGTGATCTTGGTAGTACTGAAAGTCACTTAGCGGCAGAAAGTTTCAGCAAACTCAATCTTGCTCTATCTCTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCTTTCTCTAGCAAAGATCTCATGGAAGATGTTATGTTCAGCAGTTGGTCAGAGCTTAACCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAACTAATTAGTGTGGCAATTATTAGGGTCTATGGGAAGAAGGTAACAGAAGTACCCCTTGTTGGTACCCGATTACAGTATCGTCGACATGGAATGTGTAGCATTTTAATGAATGAGCTAGAAAAGAAGCTCATGCAGTTAGGTGTGGAGAGGCTTGTTTTGCCTGCTATTCCTAGCATGCTAGAAACATGGACTGGATCTTTTGGCTTTGCAAAGATGACAAGCTCTGAGAGATCTCAATTTCTGGACTATACTTTCTTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGATGAAGATTCATTCTCCAGATTCTGTATGTTTAATAGGTTCACAACAGAAATGTGAATCTGGAAGTTGCAGTGCTAACTACGATAAGTCTTGTCAAATATCTGAAGTATACCAAGAAGAGGAGATTAACAATGGAGGCATGCTGAACCAACAAATAGGAAGCTGTGGTCATCATGGCTATGGTGCTATTGACCCCATCACCATGGAGGAGCAACCAAGTCCTAGAGATCATCAACAGTGCCAGAATGGAACCAGCTCACAGTTTTCTCTTGAAAACCAAGCTGGTAACAGGGAACTAAATTAG 3390 0.3935 MVMEGIDNCGSKKRKRGFAKKLQVNESVEVRSEEEGLLGSWHPGTVIYCGKLKRHIKYKNILENNGLNYLLDVVNVPKALDGEIESSYCYKRGFIRPIPPFVDFGTLDLKFGLCVDVIHKEAWWEGVIFDHCDGMKTRSVFFPDLGDEMQIEIHQLRITQDWDEVTGEWEQRGNWAFLELVEECERESLVAVSAKQIWYDVQGKEEFSMIGDWTYNVKYLWKNLVMEVVNDYLTLTVKYVISILNLPGNLINETRELNSDEAMANVDFNMTLTDKEIDVLKEPIPPVEVVSGANCFGRKRKHRSSTHLRSTYWTPLMFSEVELCPDAVRQYALGSSKRSRELWKERLQKHLAYLGWEIESSNKFNIKRYRYRSPDELGRKVYLSLVEVCKSMLEDPNKNNSLQSQKSRMHLTVDSHLSNVIPNPSQKNQDLNILPPSEVEPEFCHQAVVEYYYAHQSNNNKVDKKKLILKAKNHLLAEGWNFEYPPPTNKRRGIRYMSPQNKRFTTLHAACRFCIEEGIPEWAISDMQPSNVSGTNEENVDQVWSGELSHRVSQFLPKHPELDAMDGAASNRFTSNRKRKCLRNSKSNLRKCQSNGLPPSMLRSNKRVQNVSACPSQHKPLNVMSWLIDSNVVLPRSKVYYKAKGRQRTIHTMAVGKITHDGIKCNCCMKIYSLVGFEHHASGIITCRPSSSIFLEDGRSLLDCQMQIMQDHKTNQASEKPFSELCQGDNDYICSVCHDGGELILCDQCPSSFHKMCLGLKDVPDGIWVCPTCCCGICGQNKIHEDEDEHFRTCAQCEHKYHFRCLKNEAEDISRYRKTWFCGKDCEKIYEGLHKLLGVPVSVGVDNLTWTLVKFINSESCDLGSTESHLAAESFSKLNLALSLMHECFEPLKEPFSSKDLMEDVMFSSWSELNRLNFQGFYTVLLERNEELISVAIIRVYGKKVTEVPLVGTRLQYRRHGMCSILMNELEKKLMQLGVERLVLPAIPSMLETWTGSFGFAKMTSSERSQFLDYTFLDFQGTIMCQKLLMKIHSPDSVCLIGSQQKCESGSCSANYDKSCQISEVYQEEEINNGGMLNQQIGSCGHHGYGAIDPITMEEQPSPRDHQQCQNGTSSQFSLENQAGNRELN* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0188 1129 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 868 1029 IPR000182 GO:0016407
Apr7g0188 1129 Pfam PHD-finger 733 774 IPR019787 -
Apr7g0188 1129 ProSitePatterns Zinc finger PHD-type signature. 734 773 IPR019786 -
Apr7g0188 1129 ProSiteProfiles Zinc finger PHD-type profile. 731 776 IPR019787 -
Apr7g0188 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 829 IPR013083 -
Apr7g0188 1129 PANTHER PHD ZINC FINGER PROTEIN 5 262 - -
Apr7g0188 1129 PANTHER PHD ZINC FINGER PROTEIN 288 1073 - -
Apr7g0188 1129 SMART agenet_At_2 20 82 IPR014002 -
Apr7g0188 1129 SMART agenet_At_2 107 164 IPR014002 -
Apr7g0188 1129 SMART ring_2 734 773 IPR001841 -
Apr7g0188 1129 SMART ring_2 775 825 IPR001841 -
Apr7g0188 1129 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 288 1073 - -
Apr7g0188 1129 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 262 - -
Apr7g0188 1129 SUPERFAMILY FYVE/PHD zinc finger 716 773 IPR011011 -
Apr7g0188 1129 MobiDBLite consensus disorder prediction 1101 1129 - -
Apr7g0188 1129 Pfam Tify domain binding domain 656 707 IPR032308 -
Apr7g0188 1129 Gene3D - 874 1004 - -
Apr7g0188 1129 MobiDBLite consensus disorder prediction 1094 1129 - -
Apr7g0188 1129 Pfam Agenet domain 26 100 IPR008395 -
Apr7g0188 1129 SMART PHD_3 733 774 IPR001965 -
Apr7g0188 1129 SMART PHD_3 775 826 IPR001965 -
Apr7g0188 1129 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 881 1008 IPR016181 -
Apr7g0188 1129 CDD NAT_SF 924 984 - -
Apr7g0188 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 774 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0188 Apr-Chr7 6055468 6062638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0188 31 972 PHD Transcription Factor Family AT5G58610 36.364 3.25e-180 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0188 - - aprc:113851199 1967.59