Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0157 ATGGCACATCAAGGAGAACCAATGAAGCTACGATGGGGAGAACTCGAAGAGGACGATGGAGAAGATCTTGACTTTCTTCTGCCGCCAAGGCAAGTCATAGGCCCTGACGAAAACGGCATTAAGAAGGTCATCGAGTACAAGTTCGACGACGATGGAAACAAGGTCAAGATCACCACCACCACGCGCACCCGCAAACTCGCCAACGCCCGTCTCAGCAAACGCGCCGTTGAGAGACGCTCTTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTCGGTAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTTCTAGAACGTCCCAAGCCTCTTGGTGCAAAAACGGAAGAGCCGAAGACTGCTGGAGATCCGTTGGCTCAGTTTCAAAAAGGTGCTGTTCTCATGGTCTGCAGGACTTGTGGGAAGAAAGGTGATCACTGGACTTCAAGGTGTCCATACAAGGATCTTGCCCCACCGTCTGAGGGATTTGTTGATAAGCCTGCGGCATCTGATGTTGTGGCTGCCACAACTGGTTCAACCAAGGCAGCGTATGTGCCTCCTGGAATGAGAGCAGGTGCTGAGAGGACTGGATCAGATATGCGACGTAGGAACGATGAGAATTCTGTCCGGGTTACAAACCTCTCCGAGGACACAAGAGAGCCTGATTTGCTGGAGCTGTTCCGTCCTTTTGGTCCAGTGAGCAGAGTATATGTTGCTATTGATCAGAAAACTGGCATGAGTAGGGGGTTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCACAAAGAGCTATCAACAAACTCAATGGATATGGCTATGACAATCTCATCCTTAGAGTTGAATGGGCGACCCCCAGAACAAACTAA 870 0.5126 MAHQGEPMKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGAKTEEPKTAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAASDVVAATTGSTKAAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0157 289 MobiDBLite consensus disorder prediction 184 207 - -
Apr7g0157 289 SUPERFAMILY RNA-binding domain, RBD 200 288 IPR035979 GO:0003676
Apr7g0157 289 CDD eIF3G 38 156 IPR024675 -
Apr7g0157 289 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Apr7g0157 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Apr7g0157 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Apr7g0157 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Apr7g0157 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 289 - -
Apr7g0157 289 Gene3D - 177 289 IPR012677 -
Apr7g0157 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 289 - -
Apr7g0157 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Apr7g0157 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Apr7g0157 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0157 Apr-Chr7 5166980 5168814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0157 4 287 Eukaryotic Initiation Factors Gene Family AT3G11400 68.671 2.71e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0157 K03248 - gmx:100818725 554.288