Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0099 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCCAGAACACCACCACAAGGCAAGTCACCTTCTCCAAAAGAAGAACTGGCCTCATCAAGAAGACACATGAACTTTCTGTGCTTTGTGATGCACAGATCGGCCTCATCATCTTCTCCAGCACAGGGAAGATGTTCCAGTACTGCACCGAACCCTTAAGGATGGAGCAGATAATAGAAAAGTACCAGAGATCAACAGGAACTCGCATAATGGAACGTGATCACCCCCGGGAAGAATTATTCCATGACATAGCAATGCTGAGGCAAGAAACTCTCCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAGGACATGGGCTGTTTACAATATGAAGAGTTGACTAAACTTGAACAAGAATTAGAGAACTCTGTGGCAAAAGTTCGAAACCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAAAGGATCATGGAAGAGGAAAACAACAATTTGTCCAATTGGATTCAGGAGCACCGAGCAGTGTTGGAGTTTCAGAAGGCTACAGTGGAAGCAAACAAACCAGTGCAAGTAATGGATCACTTCCCATTCTTTGAAGAGCAACCTGCTGGTAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCACACCTTCATCCATATCTTCAGCTGGCACAGCCCCACAACCATAACAATGGTATTAATTCAACTATATCTTAA 720 0.4444 MGRGKIEIKRIQNTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSSTGKMFQYCTEPLRMEQIIEKYQRSTGTRIMERDHPREELFHDIAMLRQETLRLELGIQRYLGEDMGCLQYEELTKLEQELENSVAKVRNRQNELLQQQMENLRRKERIMEEENNNLSNWIQEHRAVLEFQKATVEANKPVQVMDHFPFFEEQPAGSILQLASPVLPHLHPYLQLAQPHNHNNGINSTIS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0099 239 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Apr7g0099 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g0099 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g0099 239 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Apr7g0099 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr7g0099 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr7g0099 239 Coils Coil 120 172 - -
Apr7g0099 239 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 230 - -
Apr7g0099 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0099 Apr-Chr7 3909076 3912165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0099 1 232 MADS-box Gene Family AT5G23260 48.996 3.41e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr7g0099 K-box 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0099 - - gmx:102667157 358.607