Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0098 ATGGAAGAGGGAAGTTGCGAGACCGAGACGGAGAAAATCCGCAACATATGTATCATGGCGCACGTCGACCACGGCAAGACGACCCTCGCCGACCACCTAATAGCGGCGGCGGGAGGCGGCGTCATCCACCCGAAGCTAGCGGGTCGGGTCCGATTCATGGACTACCTCGACGAGGAACAACGTAGAGCTATCACAATGAAGAGCTCCTCCATCGTCCTACGCTACAACCACCACTCCGTCAACCTCATCGACTCCCCCGGCCACATCGACTTCTGCAGCGAGGTCTCCACCGCCGCGCGCCTCAGCGACGGCGCTCTCCTCCTCGTCGATGCCGTCGAAGGCGTTCACATCCAAACCCACGCCGTTCTCCGCCAGTGCTGGATCGAACGCCTCACACCTTGCCTGGTCCTCAACAAGATCGACCGCTTAATCACCGAGTTGAAACTCACTCCCTCCGAAGCCTACGCGCGCCTCTTGCGAATCGTACACGAGGTTAACGGCATCGTCAGCGCGTACAAATCGGAGAAATATTTGTCCGACGTGGATTCTCTCCTCGCCGGCGCAGATTCCGGCGACGGCGAAGGTTTAGAGGACTACGATGATAATGAGGATGTGTTTCAGCCGCAGAAGGGGAACGTGGTTTTTGCTTGTGCTTTGGATGGTTGGGGGTTTGGGATTGGTGAGTTTGCCAAGTTATATGCGTCTAAGCTTGGGGCAAGTGTGAACGCGTTGTTGAGAGCGATGTGGGGTCCGAGGTATTTTAACCCTAGGACGAAGATGATTGTTGGGAAGAAAGGGATTGGAGCCAAGGGTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCGTTGTGGCAGGTTTATCAGGGTGCTTTGGAAGGGGATAGAGTGTTGCTTGAGAAGGTTATTAGGTCGTTTAGTTTGTCCGTGCCGGCAAGGGACCTGCAGAATAAGGATCCCAAGGTGGTGCTTCAGGCGGTTATGAGCCGCTGGCTTCCCCTTTCGGATACCATTTTGGGAATGGTTGTTAGGTGCATGCCGGACCCTGCTGCGGCGCAGCTGTATAGGATATCAAGGCTGGTTCCGAGGCGGGAGGTTGAGGATGGGGTTGATCGCGGCGTGGTGGAAGAGGCGGAGATGGTGAGAAAGGCGGTGGAGGGGTGTGATTGCAGGGATGAGGTTCCTTGTGTGGCTTTTGTTTCCAAGATGTTTGCTGTCCCAGTTAAGATGCTTCCTCCCCAAAGGGGGGAGGCTGCTAACAGTTTTGTTAATGAAGAAGAGGGAGAATCGGACGAGTGTTTTTTGGCATTTGCTAGGATATTTAGCGGGGTTTTTTATGCTGGGCAGAGAGTTTTCGTGCTTTCTGCGTTGTATGATCCGTTAAAAGGGGAATCGATGCAGAAGCATATACAGGAGGCTGAATTGAGATCGCTGTATCTAATGATGGGCCAAGGGTTGAAAGTGGTGACATCTGCCAAGGCAGGAAATATTGTTGCTATCCGAGGCCTAGGCCAGCATATATTGAAAAGTGCTACCGTCTCTTCTACTAGGAACTGTTGGCCATTTTCAAGTATGGCATTCCAGGTTGCCCCAACTTTGAGAGTTGCAATTGAGCCGTCTGACCCCGCAGATGTGGGTGCACTGCACAAAGGCTTGACGCTTCTGAATCGAGCGGATCCATTTGTTGAGGTCATGGTTTCTGCAAGAGGCGAGCATGTTCTTGCTGCTGCTGGAGAAGTTCATCTTGAGAGATGCATAAAGGATTTAAAGGAGAGATTTGCAAAAGTAAGCTTGGAGGTCTCTCCACCTCTCGTGTCCTACAAAGAGACCATTGACGGAGACATATCCAACGTGCTGGAAAATTTGAAAGTTCTAAGTAGCAGGTCAGATTATGTTGAAAAAACAACACCCAATGGAAGGTGTGTTGTTCGAGTACGGGTTATGAAACTTCTACCTTCACTTACCAAGGTGCTCGATGAAAGCTCTGATTTACTTGGAGATATAATTGGAATAAAGTTGGGGCAGACAGTTAAAAACATGGAAACCCAGAGACCTGGCATTCTTGAAAATGATAATCCAGCTGAAGTGCTGAAAAAACGCATTTTGGATGCTGTGGAGGGTGACATTTTGAGCTGGAATGAGAATGACAAGGACCATGGTGAAAAATATAAATTGAAGTGGCTAAAGATTTTGAGGAGGATATGGGCACTTGGACCAAGGCATACCGGTCCTAACCTTCTCCTTACTCCTGATGTTAAAGCAGAAAGCACTGATAGTTCTGTCTTAATACGCGGTTGTTCTCGTTTATCTGAAAGGTTGGGCTTTGTGACCGATTCTAGTATCAGCGACTCAGTTGTGGAGACATCTTCAGACAAGGGCCAAGCTTTGTACATGGATGCTGAGCGCCTTGGGAATAATGTTATATCTGGGTTCCAAATGGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTCATTGAGGCACGCATATCTCCGTTTTCAGGTCAGAGTGATGAATCTGAAACACACCAACAATCCGAGCAGTATGGCAGCTTTGCAGGGCATGTAATTGCAAATACTGTCAGAGATGCTTGTAGAGCAGCTGTACTTCAAAATAAGCCACGACTTGTCGAAGCCATGTACTTTTGTGAGTTGAATACCCCTACTGAATATTTGGGTCCGATGTATGCTGTACTTGCCCGAAGACGGGCCCGAGTTTTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACTGTGCATGCGTATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCCGATGAGCTTAGAAGGTGGACTTCTGGTGCCGCAAGTGCACTTCTCGTCCTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTTTTTATACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAACATAGCAAGAAAGTTAATGGATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGTGGTGCAGCATGGAACCAAGCAGAGGACCCTGGCCCGAAAAGTCTGA 3069 0.4953 MEEGSCETETEKIRNICIMAHVDHGKTTLADHLIAAAGGGVIHPKLAGRVRFMDYLDEEQRRAITMKSSSIVLRYNHHSVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLVLNKIDRLITELKLTPSEAYARLLRIVHEVNGIVSAYKSEKYLSDVDSLLAGADSGDGEGLEDYDDNEDVFQPQKGNVVFACALDGWGFGIGEFAKLYASKLGASVNALLRAMWGPRYFNPRTKMIVGKKGIGAKGKPMFVQFVLEPLWQVYQGALEGDRVLLEKVIRSFSLSVPARDLQNKDPKVVLQAVMSRWLPLSDTILGMVVRCMPDPAAAQLYRISRLVPRREVEDGVDRGVVEEAEMVRKAVEGCDCRDEVPCVAFVSKMFAVPVKMLPPQRGEAANSFVNEEEGESDECFLAFARIFSGVFYAGQRVFVLSALYDPLKGESMQKHIQEAELRSLYLMMGQGLKVVTSAKAGNIVAIRGLGQHILKSATVSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADVGALHKGLTLLNRADPFVEVMVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIDGDISNVLENLKVLSSRSDYVEKTTPNGRCVVRVRVMKLLPSLTKVLDESSDLLGDIIGIKLGQTVKNMETQRPGILENDNPAEVLKKRILDAVEGDILSWNENDKDHGEKYKLKWLKILRRIWALGPRHTGPNLLLTPDVKAESTDSSVLIRGCSRLSERLGFVTDSSISDSVVETSSDKGQALYMDAERLGNNVISGFQMATSAGPLCDEPMWGLAFVIEARISPFSGQSDESETHQQSEQYGSFAGHVIANTVRDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFIPKTEEEIEEFGDGSSVLPNIARKLMDAVRRRKGLPVEEKVVQHGTKQRTLARKV* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0098 1022 TIGRFAM small_GTP: small GTP-binding protein domain 12 144 IPR005225 GO:0005525
Apr7g0098 1022 SUPERFAMILY EF-G C-terminal domain-like 528 602 IPR035647 -
Apr7g0098 1022 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 241 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 CDD EF2_II 394 515 - -
Apr7g0098 1022 Gene3D Elongation Factor G (Translational Gtpase), domain 3 529 605 - -
Apr7g0098 1022 Pfam Elongation factor G C-terminus 881 965 IPR000640 -
Apr7g0098 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 346 IPR027417 -
Apr7g0098 1022 Gene3D - 625 877 IPR014721 -
Apr7g0098 1022 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 CDD eEF2_snRNP_like_C 883 962 - -
Apr7g0098 1022 CDD EF2_snRNP_III 530 601 - -
Apr7g0098 1022 Gene3D Translation factors 348 527 - -
Apr7g0098 1022 Pfam Elongation factor Tu GTP binding domain 12 249 IPR000795 GO:0003924|GO:0005525
Apr7g0098 1022 PANTHER - 8 1021 - -
Apr7g0098 1022 CDD aeEF2_snRNP_like_IV 601 887 - -
Apr7g0098 1022 CDD EF2 14 234 - -
Apr7g0098 1022 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 1021 - -
Apr7g0098 1022 SUPERFAMILY Ribosomal protein S5 domain 2-like 604 882 IPR020568 -
Apr7g0098 1022 SUPERFAMILY Translation proteins 385 524 IPR009000 -
Apr7g0098 1022 SUPERFAMILY EF-G C-terminal domain-like 883 981 IPR035647 -
Apr7g0098 1022 SMART EFG_C_a 880 969 IPR000640 -
Apr7g0098 1022 Gene3D - 879 1013 - -
Apr7g0098 1022 Gene3D Yeast translation eEF2 (G' domain) 226 331 - -
Apr7g0098 1022 Gene3D - 4 206 IPR027417 -
Apr7g0098 1022 Pfam Elongation factor Tu domain 2 434 512 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0098 Apr-Chr7 3843283 3848773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0098 7 1022 Eukaryotic Initiation Factors Gene Family AT3G22980 69.223 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0098 K14536 - pvu:PHAVU_003G003900g 1722.98